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Detailed information on CNT30377836


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZ66|SIR_ARATH, E-value = 1e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30265094Arabidopsis thalianaBrassica rapa40.9568.4786.98215forward
CNT30613060Arabidopsis thalianaArabis alpina25.331487.97133reverse complement

Expression of CNT30377836

Peptides detected in this lncRNA

>peptide 1 (32 aa)
TKLVPWELSFRAFTTSGERRAAMLSAVSCAKR*

>peptide 2 (96 aa)
DKVSSMGVIISSLHYLWRKKSRNVVSSFLCKEIVFLHIRCSRSKNISVQITTCTKRATHIFNNRAHHSLKILLQNTMKLKRLPCGQTKSTNSKLIS*

Sequence

>CNT30377836
CGACAAAGTTAGTTCCATGGGAGTTATCATTTCGAGCCTTCACTACCTCTGGAGAAAGAAGAGCCGCAATGTTGTCAGCAGTTTCTTGTGCAAAGAGATA
GTCTTTCTTCACATAAGGTGCAGCAGGAGCAAGAACATTTCTGTTCAGATCACCACATGCACCAAGCGTGCTACCCATATTTTTAATAATCGAGCTCATC
ACAGTCTTAAGATTCTGCTTCAGAACACCATGAAGCTGAAACGTCTGCCTTGTGGTCAAACGAAGAGTACCAATTCCAAACTCATCAGCTAAGTCATCCA
TAGTCAAATAGAGCTGGTTAGGGACCTTCCCAGATGGATTCTTAGTTCGAAGCATGAAGGAGTAAGATCTTCCACCACGTTCTTCTCTGTTGTACTGTTG
GTAGCTACCGTGGAACTTGATAAGCTGCACGGCTGACTCGTTGACATTTGGAGCCTCTGTTAAAAGCTCCTCGTTCAAAGGATACCTTATGAAATTACTC
TTCTCCTTGATAATTTCGACTTTGC