« Back to Arabidopsis thaliana search


Detailed information on CNT30377597


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547454Arabidopsis thalianaIpomoea triloba21.9118.988.7162forward
CNT3044614Arabidopsis thalianaPrunus dulcis22.2616.7690.4863forward

Expression of CNT30377597

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MNQAKVEGIALGWLHRAATTSRSQQWTDNGSTPHKSTMVRWLVTRLNHHFF

>peptide 2 (48 aa)
SYVTRACNPSGDYKMVEHWIGPRVGFVVGIGLDCPIQAVSEPYEPSEG*

Sequence

>CNT30377597
CGAGCTATGTAACGAGAGCTTGTAACCCAAGTGGGGACTATAAGATGGTGGAACACTGGATCGGCCCACGGGTCGGATTTGTTGTTGGCATAGGTCTGGA
CTGCCCAATCCAAGCTGTGAGTGAACCGTATGAACCAAGCGAAGGTTGAGGGTATTGCGTTAGGCTGGCTTCACAGAGCAGCGACTACCTCCCGCTCTCA
GCAGTGGACGGACAACGGTTCGACGCCACACAAATCCACTATGGTCCGCTGGCTCGTAACCCGCTTGAACCACCATTTTTTTA