Detailed information on CNT30377387


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30539730Arabidopsis thalianaBrassica napus13.8328.586.8961forward

Expression of CNT30377387

Peptides detected in this lncRNA

>peptide 1 (66 aa)
CIVSLASLEILALAGKAFFMIRLTLAIGKNLSCSLGDKEDCPFWLFPFCPPPESLSESPISENYKE*

>peptide 2 (61 aa)
LHRLFGIFRDLGVGGQGLLHDPADVSDRQEPVLLSWRQGGLSVLVVPVLPSTGIPVGIPHF*

>peptide 3 (34 aa)
MIRNRIQLVVDLSGKTEARKFRVLERVKRAGVNC*

Sequence

>CNT30377387
CTGCATCGTCTCTTTGGCATCTTTAGAGATCTTGGCGTTGGCGGGCAAGGCCTTCTTCATGATCCGGCTGACGTTAGCGATCGGCAAGAACCTGTCTTGC
TCTCTTGGAGACAAGGAGGACTGTCCGTTCTGGTTGTTCCCGTTTTGCCCTCCACCGGAATCCCTGTCGGAATCCCCCATTTCTGAAAATTACAAGGAAT
AAAAAAATAAACTTTACTCTTTTTTCAAATCATTTCCATCAATGATTCGAAATCGAATTCAATTGGTGGTTGACTTGAGTGGGAAGACTGAAGCGAGAAA
ATTTAGGGTTTTAGAAAGAGTAAAAAGAGCAGGTGTGAATTGTTAAGTGTCGGCTGGTATTGTACACAGTGGTGAAGGAGTCGCCGGAGCTTATATAAAG
AGAGGACGCACGACTTCTGCTCACTTGACACGTGATCTTAT