« Back to Oryza glumipatula search


Detailed information on CNT30371023


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 2e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673431Oryza glumipatulaSetaria viridis34.3557.6695.83192forward

Expression of CNT30371023

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSLGLPR*

>peptide 2 (33 aa)
KWLYFGIGSICFRSNRDEKSANQNNTTDKYLDH*

>peptide 3 (31 aa)
RNGYILGSGVFVSDLIEMRNPLIRITPQIST*

Sequence

>CNT30371023
AGAAATGGTTATATTTTGGGATCGGGAGTATTTGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACAGATAAGTACCTAGACCA
TTAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACT
AAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGC
CGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGC
CTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCGCTCGGGTTGCCG
AGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTC