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Detailed information on CNT30369158


BLAST search results

BLAST vs Swiss-Prot:
sp|P08222|CB22_CUCSA, E-value = 2e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30395219Oryza glumipatulaTriticum turgidum50.9752.7590.28422forward
CNT30250317Oryza glumipatulaAvena sativa47.9551.2389.92397forward

Expression of CNT30369158

Peptides detected in this lncRNA

>peptide 1 (78 aa)
KQANFIINSQHHISLIRFRTCTEIHTTGTDLTLSPILVHPSTRSTRIRTSIRYTYVHLLHRVHTRTLSCRDAHRRQPS*

>peptide 2 (75 aa)
MRGHGSTAAAALTCRGRSWWSARFSRGPLPVTMAWTKKPNMENMARRPFLISFTLSSAKASGSSARPSGSKLPPG*

>peptide 3 (48 aa)
MVMRPSPNTFAAALPASAGEERAMVAAAMSTSLAASSSAAAAAGVCVRA

>peptide 4 (31 aa)
MRYPSTAPMSTTCTAQIARMLCAWIKLGLPR*

Sequence

>CNT30369158
AAACAAGCTAATTTTATAATTAATTCACAACACCATATTTCATTGATCAGGTTCAGAACCTGCACAGAAATACACACTACCGGTACAGATCTCACCCTCT
CTCCAATACTCGTACATCCATCCACGCGGTCCACACGAATACGTACATCTATACGGTACACGTACGTACATCTACTGCACCGCGTACACACACGCACACT
CTCCTGCAGAGACGCGCATCGTCGTCAACCTAGCTAGCTTAGCTGAAGGCGATGCGTGGCCATGGCAGCACGGCGGCGGCGGCGCTCACTTGCCGGGGAC
GAAGTTGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTT
GATCTCCTTCACCTTGAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCG
AGCGGCCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATCGCCAGGATGCTCTGCGCGTGGATCAAGCTCGGGT
TGCCGAGGTAGAGCACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCGGCGGGCTTGGGCTTCGCCGCCGACTTGCGCATGGTGATGCGCCCCTCGCC
GAACACCTTCGCGGCGGCCTTGCCGGCCAGCGCCGGGGAGGAGAGGGCCATGGTGGCGGCGGCCATGTCTACCTCGCTTGCTGCTTCAAGCTCAGCTGCT
GCTGCTGCTGGGGTGTGTGTGCGTGCTG