CANTATAdb - search

Detailed information on CNT30250317

BLAST search results

BLAST vs Swiss-Prot:
sp|P04782|CB24_PETSP, E-value = 3e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30188325	Avena sativa	Secale cereale	69.16	62.91	92.16	536	forward
CNT30300806	Avena sativa	Triticum aestivum	68.26	64.75	90.36	529	forward
CNT30394515	Avena sativa	Triticum turgidum	67.1	63.26	90.77	520	forward
CNT30369158	Avena sativa	Oryza glumipatula	51.23	47.95	89.92	397	forward

Expression of CNT30250317

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MVMRPSPKGEALEAFTGVPAIAGEESAMVEAAINCSLV*

>peptide 2 (43 aa)
MACTKNPNMENMARRPFLSSLTLSSAKASGSSARPRGSKLPPG*

Sequence

>CNT30250317
GATCTTTAGTGTACAACACCAACTCCTCATCTCGACTCGCCTTAACATGATCTATCAGTGACGACACACACATGCAGCAGCAGCATCATTCAGCAATGAA
GTGGTCGGCCAAGCGCGCGCACGCAGCACACGCTAGAGGTTGAGCTTACTAATAAGCTCTTACTTGCCAGGGACGAAGTTGGTGGCGAAGGCCCAGGCGT
TGTTGTTGACAGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGTACGAAGAATCCGAACATGGAGAACATGGC
GAGGCGTCCGTTCTTGAGCTCCTTGACCTTGAGCTCTGCGAAGGCCTCCGGGTCGTCGGCGAGGCCGAGGGGGTCGAAGCTGCCTCCGGGGTAGAGCGGG
TCGACGATCTCACCCAGCGGTCCACCGGCGACGCGGTACCCCTCGACGGCGCCCATGAGCACGACCTGACAGGCCCAGATGGCGAGGATACTCTGGGCGT
GTACGAGGCTGGGGTTGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCAGGGGCTGCCGGACGCGGACACCTTGGGCTTGGCGGCCGTCTTGCGCATGGT
GATGCGGCCCTCGCCGAAGGGGGAGGCCCTGGAGGCCTTCACGGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTGGAGGCTGCCATTAATTGC
TCGCTAGTCTGAGGTGAGGTGCTTCGAGTGAGCTCTCAGGTAGTAGTAGGAGCTGGTGGTGTCTGTTGGTGCTGT