Detailed information on CNT30362494


BLAST search results

BLAST vs Swiss-Prot:
sp|Q940H8|FRL4B_ARATH, E-value = 4e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30351493Sorghum bicolorEragrostis tef50.9897.2985.19466forward

Expression of CNT30362494

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSFISDLFCFLTEPTGSKPGGRQEPFHWCKLPSHCHNRHRGQGSSWVGWSMAWECRR*

>peptide 2 (52 aa)
MGGRLGKCGGSWERRHTSIVSETTCLGRRHWASIACTDALGCRAAAAATGSA*

>peptide 3 (65 aa)
MRLVAGPLLLPLVALDAAFFFSVLAFSSSSSCFRRSSSENSASRLWSSTHLMTARSADCSFLFALL

>peptide 4 (58 aa)
MMGGTGRLWRMLGGKGRLWHMRCGKGRSWHMRCGKGRSWHMRYGKGRSWHMRHGRETG*

>peptide 5 (38 aa)
MRRELNTTHLVVVVRTYKMRYPTYRCSQSLQNRAIVRF*

>peptide 6 (35 aa)
MLPFSSQSWLSPALQVASEDPPVKTQLLGYGPQHT*

Sequence

>CNT30362494
GGTAGTGGTCTAAGATGAGACGAGAGCTAAACACAACACATCTAGTAGTAGTGGTAAGGACATATAAGATGAGATACCCAACCTACCGTTGTAGTCAGTC
ACTACAAAATAGGGCCATTGTGCGATTCTGAGTCGTTGGCATCATCAGTTGTTGTCATGTCATTCATCAGCGACTTGTTTTGTTTCCTGACTGAACCTAC
CGGTAGTAAGCCTGGTGGAAGGCAGGAGCCATTCCATTGGTGTAAGCTGCCATCCCATTGCCATAACCGCCATAGGGGGCAGGGTAGCTCATGGGTGGGG
TGGAGTATGGCATGGGAATGCCGACGTTGACACTGGCTACCTCCTCAGCTGGGTAAACATATGGCTCCCTGATCACCGGTGGGCTCCGGTTGCAGTAGAG
GCCATGTCCAACCGGCCTGTCATAGGGGTAAGGGGAGGCTGTGGTGTATGATGGGTGGGACGGGGAGGCTGTGGCGTATGTTGGGTGGGAAGGGGAGGCT
GTGGCATATGCGGTGTGGGAAGGGGAGGTCGTGGCATATGCGGTGTGGGAAGGGGAGGTCGTGGCATATGAGGTATGGGAAGGGGAGGTCGTGGCATATG
AGGCATGGGAGGGAGACTGGGTAAATGTGGTGGGAGCTGGGAAAGAAGACACACAAGCATTGTTAGTGAGACGACCTGCCTTGGCAGGAGGCATTGGGCC
TCCATTGCTTGCACGGATGCGCTTGGTTGCAGGGCCGCTGCTGCTGCCACTGGTAGCGCTTGATGCTGCCTTTTTCTTCTCAGTCTTGGCTTTCTCCAGC
TCTTCAAGTTGCTTCCGAAGATCCTCCAGTGAAAACTCAGCTTCTAGGTTATGGTCCTCAACACACTTAATGACAGCTCGCAGTGCAGACTGCTCTTTCT
TGTTCGCATTGCTC