Detailed information on CNT30359320


BLAST search results

BLAST vs Swiss-Prot:
sp|P27492|CB21_TOBAC, E-value = 2e-118

BLAST vs NONCODE:
NONMTRT001605, E-value = 2e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30562274Lactuca sativaActinidia chinensis51.6948.5384.78414forward
CNT30176338Lactuca sativaVigna angularis49.6943.8881.91398forward

Expression of CNT30359320

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGRSYHQGKVGQQPHPMVHRQFCSPQQHPSR*

>peptide 2 (92 aa)
MTSSSRFLENVSGSAESPANGPRYLTRSGPYHGLPDGAAFLAAAVFLMETRPFPKSSELEGLVFTAWPAKGEERAMVEAAIVSFLKLETKNI*

>peptide 3 (50 aa)
MDFLMAQPSWQLQSSSWKPVHFRKAQNLRDLFSLLGLRKERREPWWKQPL*

>peptide 4 (75 aa)
MDQTRVSQVIKPTFTEDLGSSLEPYSLTELHTITGQELREDAAKSSKHCPSAVDDLKLTVLGKCLWISRKSGEWA*

Sequence

>CNT30359320
TACCCAAAAATAGCTATATATTAATTCACAAATCATTTTACATCAAAACCCTTATTTAGTACATTCACTTTCCGGGGACAAAGTTTGTAGCATAAGACCA
GGCGTTATTTGCAACAGGGTCAGCAAGGTGGCCCAATGGGTCGAAGCTACCACCAGGGTAAAGTGGGTCAACAACCTCACCCAATGGTCCACCGGCAATT
CTGTAGCCCTCAACAGCACCCATCAAGATGACTTGGGTGGCCCAGATAGCCAAGATGCTCTGAGCATGGACCAAACTAGGGTTTCCCAAGTAATCAAGCC
CACCTTCACTGAAGATCTGGGATCCAGCCTTGAACCATACAGCCTCACCGAACTTCACACCATTACGGGCCAAGAGCTCAGGGAAGACGCAGCCAAGAGC
TCCAAGCATTGCCCATCTGCAGTGGATGACCTCAAGCTCACGGTTCTTGGAAAATGTCTCTGGATCAGCAGAAAGTCCGGCGAATGGGCCTAGGTACTTG
ACACGGTCAGGGCCGTACCATGGACTTCCTGATGGCGCAGCCTTCTTGGCAGCTGCAGTCTTCCTCATGGAAACCCGTCCATTTCCGAAAAGCTCAGAAC
TTGAGGGACTTGTTTTCACTGCTTGGCCTGCGAAAGGAGAGGAGAGAGCCATGGTGGAAGCAGCCATTGTAAGTTTTCTTAAATTAGAAACTAAAAATAT
TTAGAAAGTTGGGGGCTGACTGCTTAAGTCATATGGTTCTTCACAAGTGCTATAAATAGGATGGTGCATTTTGTCGGGTACTGTTTTATCTTCCGGATAT
T