Detailed information on CNT30352541


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696975Eragrostis tefOryza sativa3.0825.0995.6569forward

Expression of CNT30352541

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MQCGCMGLSSWLARVALIHHARPPSSVICEFSQLIELICS*

>peptide 2 (40 aa)
QSLAELEEQQVKKRRRGGLTWRWRASVLVARNDLPMHVSS*

>peptide 3 (35 aa)
MTCLCMSPRSNLNMAMAMRSMDDRCSVAAWACHLG*

>peptide 4 (46 aa)
MIDAVWLHGPVILASQSGSHPPCQATLFRDLRIFPAYRVDLLLKFG*

>peptide 5 (49 aa)
MAIDAAFSVDDHQFCQVHAVPVTGSKNCSAPTCMGMRSTRLCVCVCGSA*

>peptide 6 (38 aa)
MKQEKGETYFILVSPFITIKVVVILPSKYVCKENTSSI*

>peptide 7 (59 aa)
MNNICFFLQVNFGQYRNLKKSNQPIITFAWKRENWSEGDFSVTLGSLSQVDQLYWSSTW*

Sequence

>CNT30352541
CAGAGCCTGGCTGAGCTGGAGGAGCAGCAGGTGAAGAAGAGAAGAAGAGGGGGCCTTACATGGAGATGGAGAGCCTCTGTTTTGGTAGCCAGGAATGACT
TGCCTATGCATGTCTCCTCGTAGCAACCTCAATATGGCCATGGCAATGCGATCAATGGATGATCGATGCAGTGTGGCTGCATGGGCCTGTCATCTTGGCT
AGCCAGAGTGGCTCTCATCCACCATGCCAGGCCACCCTCTTCCGTGATTTGCGAATTTTCCCAGCTTATCGAGTTGATCTGCTCCTGAAATTCGGGTGAT
ATATTCTGAACCTCAGGCTTCTCATTCTTACTGACCCACTTGTTGTATGACTTATATATCGTCGTTGTAGAGAAGTTTTAAATTCCTTCTGTGGTGCTGA
TTAAAGAGCTTGCGTTGCTTTTCAGTTCATGAATGAAACAAGAGAAGGGAGAAACATATTTCATCCTTGTTTCCCCCTTCATAACAATAAAAGTAGTAGT
AATATTACCATCTAAATATGTCTGTAAAGAAAATACAAGTAGCATATAACTTGGGCGCTGACACATTACTGCTATTTTATTACTAGGATAGAATTTTTAT
TTCTTTCCATGGCTATTGATGCTGCTTTTTCTGTAGATGATCATCAGTTTTGTCAGGTACATGCAGTACCAGTCACTGGATCCAAGAACTGCTCTGCTCC
AACCTGCATGGGCATGAGGAGTACGCGTTTGTGTGTCTGTGTGTGTGGCAGTGCGTGAGACCCTGGACGCTACAGGTGGAGCATATTTCACGTACAGTAC
TTTTGACGTGTGCTTTTGCCGTTTGCACGTTGCATGCTTCGTCGTCGTATGCTAAAAAGGGCGGTGTACTGAAAAAATAAACTGTATTTCTTTGGGTTTT
TAATACTTGACACTTTTGACCAAACACGCAAGGAAGTTTAAGCTTTAGATGTGAAATGACTAAAATGCCTTTGGTAATTAACCAAAATGTTCTAGAACAT
ACTATGCATTGAAGAAATGAGATATTTTATAGGAGCAAATTGAAAACCATTTCTTAAAAAACGTGAAGTGACAAGTATTTGAAAACAAATAAGATGGTCA
AAAGTGACAAATATTGAAAAACGGAGGAAGTATAATCCTATCTGTCAATCTATTCGGGATCAGTGAAGTATCTAAGAAATGTCTTTTCGGCAAATGATAT
TTTGAAAGCAATTTCCCTGACAAAATTATACCAGCATCGTTTTTACATTAAGACTATTGAACTTTGCGGCTTCTCATATGTAACACATCTTCTAGTTCCA
GGCTATCCATTGCCCACCCATCCTTTAAGACACTAAACAAGAGGAAATTGGCTTGATTGTATTGTTGAGCCCCGAAGGTGGATTGCTCACATTTCAAGGG
TCCCTAGGCTTACGAAGTTCAAATCAAAACAGTCAAATATTGTAAGTGGAAAGGAAGAGAGTCTACAATCACATTTGCACCGAAGAGAGCCCTGTCACTA
GATTCAGTTAATTTGTTCACGAATAAATTGGTTGCGTGACAGCGTGAGGCGTGAGCCTCCCCCCCACCACCCAAAAAAAAAAAAATGGTTGTGTGAGGGA
AGAATGTGAACAAATAGGGTTTGGGCCTTCAACATTGCAGCTTCTAGTCTCTAGCTAGCTTCCAACGAGTTCTTTTAGAGCTCAGAATTCAAGAATACTA
AGGCTTTTTGAAAGTTTTTTTTTCAGTGGAAGGCTTTTTGAAAGTTTACGAGTCCGGAATTATTCACGGGTCCTAAGGTTTCAAAACAACAAGTGTCTAA
TATGAACAACATCTGTTTTTTTTTGCAGGTAAATTTTGGACAATATCGTAATCTTAAAAAATCAAATCAACCAATCATCACATTTGCATGGAAGCGTGAA
AATTGGAGCGAAGGTGACTTTAGCGTCACTCTAGGCAGCTTGAGCCAAGTGGACCAGCTATATTGGAGCAGTACCTGGTAAGGAGAATGCCATGCGTGTA
CCAATATTGTTTCATGGTTGAAGACGTGTGTTTGCTCGACAATATATAGTTGGGATTCTTTAGTGGTCTGGTTTCGTATATGTGAACTATACGAAAAACT
GTACCAAAAGTTGTACATAGAAAACCTCTATTGAGATGCTGGAAACATAGCTTTCCGGAATCATGTAGATTTATGCTCCTTCATCAATGTCTAAACATAT
TTCGTCTCTCAATAAAGCTACCCTTGCTTGGTTTATCA