Detailed information on CNT30345743


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT308584Eragrostis tefZea mays4.0728.3698.2557forward
CNT30575453Eragrostis tefOryza barthii9.4221.3990.91132forward

Expression of CNT30345743

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MNEKGVVKEPFRRLKSGKNPEEKKGSLDLCSS*

>peptide 2 (68 aa)
MESQSISQDGYLLRWKVSVSSHGVSVKSSFAISGTGGASVGEGVGGCRHVRILGHGRRVVVVGGGRAR*

>peptide 3 (67 aa)
MRLGVLGGTGGGGVEASLWGRRGFTARALYSARPGPCTRSGEASISSSLFIAIASPRWISTKMILLF*

>peptide 4 (65 aa)
MACLDRSTSPWTGVGCGLVFLVGLVGVGLKRLSGEEEASRPGLYIVPGQGRAREAAKRASPPRCS*

>peptide 5 (43 aa)
SEEEKGTRQLLRTQVTTHKQHMHDQESAYHCSTDHISDLKTRK*

>peptide 6 (35 aa)
RRKKKAQDNCSGHRSQRTNNTCMTKRAHIIAALIT*

Sequence

>CNT30345743
TCGGAGGAAGAAAAAGGCACAAGACAACTGCTCAGGACACAGGTCACAACGCACAAACAACACATGCATGACCAAGAGAGCGCATATCATTGCAGCACTG
ATCACATAAGCGATTTAAAGACACGCAAGTAGTTTACATAAGCTAGTGAAATTAAGCTGCAACAGATAATAACACTGGATTACACATTCTCGACTGGCCG
TGCCGTTAAAAAAACAACCGGCAGTTCAACCAGGAGATCATCACGTAGTACTACAACACAACACTGCACGACTTATACTAGCTAGTTACTGCTACTGGCA
GGGGCCCTGCCGTTGCTAATTCGAAATGAAAATTACATAGCTATTGAGCTGACTGAATCTTGCTACTACTGGTAGTACGTAGTTCAGTTGATCGTTGTTT
ATGAGAGGATGGAGTCCCAGTCGATCTCCCAGGACGGGTACTTGCTCAGGTGGAAGGTCTCCGTCTCGTCCCACGGGGTCTCCGTGAAGTCCAGCTTCGC
CATCTCCGGGACGGGCGGCGCCAGCGTCGGAGAAGGTGTAGGAGGGTGTAGACATGTAAGAATCTTGGGTCATGGAAGAAGAGTAGTAGTTGTAGGGGGA
GGAAGAGCTAGATGAGGAAGCACTCGGTATAAAAGGCTCGAGTGCTTTCATTAGCTCTTGATCCGAAGCAGAGGCCATATGGTGTGTGCTAGTATTGTAC
ATGTCGATGGCTGCGGCCATTAGGACTAGATGGAAGCTCGGATGGAGCTAGAAGGCAGTGGAAAACTAAAATCAGGAAGAAATAAAAGTTGAAAAGTTTG
GAAATCAGCCCTGTTCCTCAATAAAAGTTGAAAAGTTTGGAAATCAGCCTATCAGGTTGTGAAAGAAGGGAAAATAAAAGGAAGATGAACGAGAAGGGTG
TTGTAAAAGAACCCTTTCGAAGGCTGAAAAGCGGCAAGAATCCAGAAGAGAAAAAAGGTTCTCTGGATCTCTGTTCCTCCTAGGAGAGCTGATGAAGGTG
AGAAAACATCCAAACCCAAGAACACAGCTTCTTTTGATCTAATAAACCCAAAAGAAGAGCCTTCTTGAACCGGACCTTTTCTTGTGTAAGTCCGTGCCTG
CTGCTAAAAAGATCAGAGTTCAGAGAACAAACCTGGCGTCGTCGATGGCTTGCTTGGATCGCTCAACCTCACCGTGGACTGGAGTGGGATGCGGCTTGGT
GTTCTTGGTGGGACTGGTGGGGGTGGGGTTGAAGCGTCTCTCTGGGGAAGAAGAGGCTTCACGGCCAGGGCTTTATATAGTGCCAGGCCAGGGCCGTGCA
CGAGAAGCGGCGAAGCGAGCATCTCCTCCTCGCTGTTCATAGCGATTGCCTCTCCTCGATGGATTAGTACAAAAATGATTCTATTATTTTGACTAAACAA
TG