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Detailed information on CNT30344742


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691443Eragrostis tefOryza sativa8.2124.6585.3989reverse complement
CNT30109567Eragrostis tefOryza longistaminata15.4142.1782.04167forward

Expression of CNT30344742

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MGYVSSLSPLRTRPRVGARPQHPCGHPPTSLYPLAAA*

>peptide 2 (33 aa)
MKFPVRLVAGNILMNGHSEGSCFNFLLQLFNKE*

>peptide 3 (46 aa)
RQLAFNWNMNRRAHPSPSLCFSACSSFYLFLSQSLLASYHWQQPPC*

>peptide 4 (94 aa)
MMERIQRGGDSRAPVSDSRTRSTCDGRHGFIRTPIGTFLYFMESLSSLLSNGSSLTPISIRKHLQSSISCPRCCDTRFWPNGLCIKFESIKDAS*

Sequence

>CNT30344742
CCGTCAACTAGCATTTAATTGGAACATGAACAGGCGAGCACATCCATCTCCATCCCTGTGTTTTTCTGCCTGTTCCTCCTTTTATCTTTTCCTGTCTCAA
TCGCTCCTAGCCTCCTACCATTGGCAGCAGCCGCCTTGCTAAGTCGTGGAGCTCGGTAGATCGGCAGTTCAGCAGATCGTGGATGCAATCGATCGTTCTT
CTATGTGGATTGGTCTGAGATTGATCCGTCTTCTTTGACCCCTACTGGTGTTGATCCATGTAAATCACAAACCAATTTTGAGGCTCCCTTCTAACGATTG
GCGTTCATCAGCAGGTGGAATGCACCAATCACCTCTGCAAGTCTGCATCTAGGTAAGATGGTACTCAAAAGCTCGCTCTTCATTTCAAGCTGAGATATGT
AACTGGATCGATCATTTAGGTGGTTGATCACTATTATTTTGGAGAAGTCGTCCAGAATTTAGTTGTGGCGCAATCTACTATACTGATGCAACTATGAAAT
TTCCTGTCAGGTTAGTTGCTGGGAACATCTTGATGAACGGACATAGTGAGGGCTCATGTTTTAATTTTCTACTACAATTGTTCAACAAGGAATGATGGAG
AGGATACAAAGAGGAGGGGATTCGCGAGCGCCAGTTTCGGACTCCAGGACAAGGTCAACTTGTGACGGACGGCACGGCTTCATACGGACTCCAATTGGGA
CGTTCTTGTACTTTATGGAAAGCTTATCAAGTCTACTTTCCAACGGATCCAGCCTCACACCCATATCTATTCGGAAACATCTACAGTCGTCGATTTCCTG
TCCACGGTGCTGCGACACCCGGTTTTGGCCCAATGGGCTATGTATCAAGTTTGAGTCCATTAAGGACGCGTCCTAGGGTTGGAGCACGACCCCAGCACCC
CTGTGGTCATCCTCCCACGTCCTTATACCCCTTAGCCGCCGCCTAAGAACAGTTGGGTTTTGATTAGTTGAAAGTTAGCCATTGCTACTTCTTTGTAAGC
ACGCGTGTTGACTAAACCGCCCGACTTTTTGTATTCGGAACCTCACCATAGTTGAATTCAGTTGTTTAAGACCTTCAATTTCAT