« Back to Theobroma cacao search


Detailed information on CNT3033444


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTCAT003423, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30651165Theobroma cacaoRosa chinensis13.5823.0888.4169forward

Expression of CNT3033444

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MQIRFIEDQSYIHAGFLCLGIKTKFRHMNGLELAFSGSGLGRPMTRLVERSLIVRVLYMANCEVGWVVFNFFSSYV*

>peptide 2 (82 aa)
VDSNSTCYFNSKNVFSKLKEDLCTRLPCEMSVESFFKVPFRFGCSFQQSPKYANTVYRGSKLHTCWVSLFRHKNKVQAYEWA*

Sequence

>CNT3033444
GTAGATTCTAATAGTACTTGTTATTTTAATTCAAAAAACGTGTTTAGTAAGTTAAAAGAAGATTTGTGTACGCGCTTGCCCTGTGAAATGAGTGTGGAAT
CATTTTTCAAGGTACCATTCAGATTTGGTTGCTCGTTTCAACAAAGCCCAAAATATGCAAATACGGTTTATAGAGGATCAAAGTTACATACATGCTGGGT
TTCTTTGTTTAGGCATAAAAACAAAGTTCAGGCATATGAATGGGCTTGAACTAGCCTTCTCAGGCTCTGGCCTTGGCCGACCCATGACACGTCTAGTTGA
AAGGAGTCTTATTGTAAGAGTCTTATACATGGCAAATTGCGAAGTGGGGTGGGTGGTGTTCAATTTCTTTTCAAGCTATGTTTGATGGGAAGAAGAGGCC
GTTCAGTGTGATCCCTCCATCGACGTAAATAATCTGCCCTGTTATATAAGAAGCTGCAGGCAGGCAGAGAAATGCCACCAATGACGAGACTTCCTTTGGC
TCTCCGGC