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Detailed information on CNT30319672


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42823|RBS_GLYTA, E-value = 2e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30613376Asparagus officinalisArabis alpina27.8834.4688.11143forward

Expression of CNT30319672

Peptides detected in this lncRNA

>peptide 1 (36 aa)
SQHNSFIYHVAGPITYSSPTYISSIQLSSVGERAAI*

>peptide 2 (68 aa)
MIRMNAVGGLVGDEADALHLTVVVESDDPDECRGVLNLLDQLLNGQGRKVGEGLELLDALNRPHLRRRT

>peptide 3 (48 aa)
MIKRKLVGSRLPDHLLRGLVGDEADALHLTVVVESDDPDECRGGACRR*

Sequence

>CNT30319672
TAGCCAACATAATTCATTCATATACCATGTAGCCGGACCTATAACTTACTCATCACCAACATACATATCATCAATACAACTCTCATCCGTTGGAGAGAGA
GCGGCTATATAAATACTTATATATATATACCAACATGCAACAATCTAAAAAAACCAGTGGCAAAGAAATATTGGAAATTGAAAAGGAAAGCACTTCCAAA
TGATCAAGCGGAAACTAGTCGGAAGTCGACTTCCGGATCATTTACTGAGGGGGCTTGTAGGCGATGAAGCTGACGCACTGCACTTGACGGTTGTTGTCGA
ATCCGATGATCCGGATGAATGCCGTGGGGGGGCTTGTAGGCGATGAAGCTGACGCACTGCACTTGACGGTTGTTGTCGAATCCGATGATCCGGATGAATG
CCGTGGGGTACTCAATCTGCTTGATCAACTGCTCAATGGACAGGGTAGGAAGGTAGGAGAGGGTCTCGAACTTCTTGATGCCCTCAACAGGCCACACCTG
CGACGTCGCACAA