Detailed information on CNT30312015


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30567603Camelina sativaActinidia chinensis37.0466.6995.36883reverse complement

Expression of CNT30312015

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAHLELSIPWDGSTKQPPRPTYLKFENRSRALRPRCL*

>peptide 2 (38 aa)
MLKLSGLSPLYPSQTNDLHVSIAAGLHQSFLWLRPAQA*

>peptide 3 (30 aa)
MSDSLVRVSRRVEWGAHRPTPGARRCRGTP*

>peptide 4 (35 aa)
ICTDGRSARARALGFSATAAPSYSSRPGSCPDGRV*

>peptide 5 (30 aa)
MSDSLVRVSRRVEWGAHRPTPGARRCRGTP*

>peptide 6 (92 aa)
MLTLEPFSDDQGRSAVHPRGIPPISFLTPYGFTHPLTRTHVRLLGPCFKTGRMGSPQADARSTQMPRHAVKARAADHDHGSDVSAGVTRARA*

>peptide 7 (92 aa)
MLTLEPFSEDQGRSAVHPRGIPPISFLTPYGFTHPLTRTHVRLLGPCFKTGRMGSPQADARSTQMPRHAVKARAADHDHGSDVSAGVTRARA*

>peptide 8 (58 aa)
LHRRPLRPGSRPRFFSDRRALLLIEAWLLPRRPGIGRALQRHPFSGLVDSAGELLHTP*

>peptide 9 (82 aa)
MVRLVFRPYTQVRRTICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQKIKVGRRCTREGSRQSASLRLTGLLTR*

Sequence

>CNT30312015
ATCTGCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCTAGGTTTTTCAGCGACCGCCGCGCCCTCCTACTCATCGAGGCCTGGCTCTTGCCCCGACGGCC
GGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACC
ACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTGGGCACCGTAACCCGGCTTCCGGTTCATCCCGCATCGCCAG
TTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCGTGGGACGGCTCAACAAAGCAGCCGCCCCGTCCTACCTATTTAAAGTTTGAGAATAGGT
CGAGGGCGTTGCGCCCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGCGTCCGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAG
CTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTGGC
TTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTCGGCGGTGCACCC
GCGAGGGATCCCGCCAATCAGCTTCCTTACGCCTTACGGGTTTACTCACCCGTTGACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGT
CGAATGGGGAGCCCACAGGCCGACGCCCGGAGCACGCAGATGCCGAGGCACGCCGTAAAGGCGCGTGCTGCAGACCACGATCACGGCAGCGACGTCTCCG
CGGGCGTAACAAGAGCCCGGGCTTAGGCCACCGCCGTAATCCGCGTCGGTCCACGCCCCGAATCGATCGGCGGACCGGATTGCTCCGTTCCGCATCCGAC
CGGGACGCATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTCTTTGACTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTT
GTTCGCTATCGGTCTCTCGCCCGTATTTAGCCTTGGACGGAATTTACCGCCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGTAGACAGCGCCTCGT
GGTGCGACAGGGTCCGGGCACGACGGGGCTCTCACCCTCTCCGGCGCCCCTTTCCAGGGAACTTGAGCCCGGTCCGTCGCTGAGGACGCTTCTCCAGACT
ACAATTCGAACGCCGAAGACGTCCGATTTTCAAGCTGGGCTTTTCCCGGTTCGCTCGCCGTTACTAAGGGAATCCTTGTTAGTTTCTTTTCCTCCGCTTA
TTGATATGCTTAAACTCAGCGGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTG
GCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGATGATCAAGGTCGGTCGGCGGTGCAC
CCGCGAGGGATCCCGCCAATCAGCTTCCTTACGCCTTACGGGTTTACTCACCCGTTGACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGG
GTCGAATGGGGAGCCCACAGGCCGACGCCCGGAGCACGCAGATGCCGAGGCACGCCGTAAAGGCGCGTGCTGCAGACCACGATCACGGCAGCGACGTCTC
CGCGGGCGTAACAAGAGCCCGGGCTTAGGCCACCGCCGTAATCCGCGTCGGTCCACGCCCCGAATCGATCGGCGGACCGGATTGCTCCGTTCCGCATCCG
ACCGGGACGCATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTCTTTGACTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTAC
TTGTTCGCTATCGGTCTCTCGCCCGTATTTAGCCTTGGACGGAATTTACCGCCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGTAGACAGCGCCTC
GTGGTGCGACAGGGTCCGGGCACGACGGGGCTCTCACCCTCTCCGGCGCCCCTTTCCAGGGAACTTGAGCCCGGTCCGTCGCTGAGGACGCTTCTCCAGA
CTACAATTCGAACGCCGAAGACGTCCGATTTTCAAGCTGGGCTTTTCCCGGTTCGCTCGCCGTTACTAAGGGAATCCTTGTTAGTTTCTTTTCCTCCGCT
TATTGATATGCTTAAACTCAGCGGGTGATCCCGCCTGACCTGGGGTCGCTTTGAAGACTTTGGGTCATCTAGAGCTTCCGGACA