Detailed information on CNT30288579


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187262Triticum aestivumSecale cereale44.2379.0494.78460forward

Expression of CNT30288579

Peptides detected in this lncRNA

>peptide 1 (40 aa)
TMAGGENLHGTGRHQGDGAPSPLPCNLPPSANREPATMMR*

>peptide 2 (37 aa)
RWQEGRTSMGRVATKEMELLLPYHATSLPAPTESRLP*

>peptide 3 (88 aa)
DDGRRGEPPWDGSPPRRWSSFSPTMQPPSQRQQRAGYHDAIALSQASRGCASHRLPRPTRSYITHASPLRRGRWLVCRRGWLQLLADL*

>peptide 4 (82 aa)
MFPGFQGAPAHRRHASSALWARTNRSPLQVCTSPAIISTLSGSTTASTTKVMTTAASSASWWLRDSAARLSSAATEAVVRSA*

>peptide 5 (49 aa)
MHISCYYLNPVRQHHRVDDEGDDYGGKQRELVAARLGGTALVSSDRGGC*

>peptide 6 (30 aa)
MDRVVVYVLFEFHLVISGFDHLIEKIIYCLL

>peptide 7 (36 aa)
MFYYSPIHIIDMKLDFGLHLSKVGVQGTRGEESLSK*

>peptide 8 (37 aa)
MPPLLSGLGPIARPFKYAHLLLLSQPCPAAPPRRRRR*

>peptide 9 (37 aa)
MNPHASPSSTTGHPSLRSRRRGASSCPSRACSAPLLP*

Sequence

>CNT30288579
GACGATGGCAGGAGGGGAGAACCTCCATGGGACGGGTCGCCACCAAGGAGATGGAGCTCCTTCTCCCCTACCATGCAACCTCCCTCCCAGCGCCAACAGA
GAGCCGGCTACCATGATGCGATAGCGTTGTCGCAAGCCTCGCGGGGCTGTGCATCTCATCGTCTGCCACGCCCTACCAGGAGCTACATCACCCACGCGTC
TCCTCTGAGGAGGGGACGGTGGCTTGTGTGTCGGCGTGGTTGGCTCCAGCTCCTCGCCGACCTATGAATCCACATGCGTCGCCGTCTTCGACCACAGGTC
ACCCATCCTTGAGGAGCAGAAGGAGGGGCGCATCTAGCTGTCCATCAAGGGCCTGCTCTGCTCCTCTTCTTCCTTGACCATCGGTACCACCATGTTCCCG
GGCTTCCAAGGTGCGCCAGCACACCGCCGCCATGCCTCCTCTGCTCTCTGGGCTCGGACCAATCGCTCGCCCCTTCAAGTATGCACATCTCCTGCTATTA
TCTCAACCCTGTCCGGCAGCACCACCGCGTCGACGACGAAGGTGATGACTACGGCGGCAAGCAGCGCGAGTTGGTGGCTGCGAGACTCGGCGGCACGGCT
CTCGTCAGCAGCGACAGAGGCGGTTGTTAGGAGCGCATGATAGACTACTAACTAGACAAGTATCTGCAACGTTCAGCGTCGAAGATGATGCTTACCAGAT
GTTCTACTACAGCCCCATCCATATCATCGACATGAAGTTAGATTTTGGCCTTCATTTGTCAAAAGTTGGTGTACAAGGAACTCGAGGAGAAGAATCTTTA
AGTAAATAATTTATATAGATCAGGATCTTATGTTGTCGAGGTGGCTGCTGTTGTGACCAAAGATCAGCCTGGAGATGTGCATCATAGTTTTAGTTGATGT
TGCCACCATGTTTTGGTGCCTGTGTATTTGATTGTATGTACACTTGATGGACCGTGTAGTCGTGTACGTGCTGTTTGAGTTTCATTTAGTGATTTCTGGA
TTTGATCATTTAATTGAGAAAATTATTTATTGTTTGCTGT