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Detailed information on CNT30269178


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 2e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30123770Chenopodium quinoaPhyscomitrium patens34.7131.283.45278forward
CNT30359318Chenopodium quinoaLactuca sativa32.8342.9784.03263forward

Expression of CNT30269178

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MCHIRSTQNSHFEHSFNNQNTCTLKHTKLKLLHL*

>peptide 2 (36 aa)
MQLISSDVTIFQQCVTLEAHKIRILNIHSTIKTHVH*

>peptide 3 (40 aa)
MVILPPPRMFSEAELSLTACPAKEGEESAIVEEAIVKRAS*

Sequence

>CNT30269178
TTATGGTACATATGTAATTTATTTATTTATTCATATTTGGTTTTCTAGATTATAATCATAAAAATTCTGATTGACTACAAATAATAAACAGACTATGCAG
TTGATTTCAAGCGATGTCACAATATTTCAACAATGTGTCACATTAGAAGCACACAAAATTCGCATTTTGAACATTCATTCAACAATCAAAACACATGTAC
ATTGAAGCATACAAAGCTCAAATTGTTACACCTTTGATTCATTTGCACTAAATTCATACTAAATTACTTCACTTGCCGGGAACGAAGTTGGTGGCGTAGG
ACCAAGCATTGTTGTTAACCGGGTCGGAAAGGTGGTCAGCAAGGTTCTCCAATGGGCCCTTTCCGGTAACAATAGCTTGAACAAAGAATCCGAACATAGA
GAACATAGCCAACCTACCATTCTTAATCTCCTTAACCTTCAACTCGGCGAAGGTCTCTGGGTCAGCGGAAAGGCCCGCTGTGTCCCAACCATAGTCTCCA
GGAAATTCACCAGTGAGGTATGATGGGGCCTCACCAGAGAATGGGCCCAAATACTTAACACGGTCTGGGCCGTACCATGGGCTTCCTGATGAAACATTTT
TGGGCTTTCCTGCAGTTTTCCTCATGGTGATCCTTCCCCCACCTAGGATGTTTTCAGAGGCGGAGCTAAGTTTAACTGCCTGCCCGGCCAAAGAAGGGGA
AGAAAGTGCCATTGTTGAGGAGGCCATTGTTAAGAGGGCGAGCTAAGAACTATAACAATTATGTAACAAGAATATTTTTTTTATGTTTGTTGAAGTGATG
A