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Detailed information on CNT30260872


BLAST search results

BLAST vs Swiss-Prot:
sp|E9KBR8|C9B16_SOYBN, E-value = 8e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376290Brassica rapaArabidopsis thaliana17.7352.6286.85251forward
CNT30541490Brassica rapaBrassica napus47.8899.4197.94678forward
CNT30234593Brassica rapaBrassica oleracea15.1810098.6215forward
CNT30309608Brassica rapaCamelina sativa25.3594.9784.68359forward
CNT3074793Brassica rapaBrassica juncea15.0454.62100213forward
CNT30480128Brassica rapaArabidopsis halleri35.3881.3382.24501forward
CNT30114657Brassica rapaEutrema salsugineum25.3582.5385.52359forward

Expression of CNT30260872

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MGTSELASWSFSFINCCKKSLHSPSFLLPRFVIFSMAPSNMASSSRAYTRICFTSP*

>peptide 2 (41 aa)
MSLTCLIKSILVILTFEDFIFMISSFSGKIYLNNYLPRVRL*

>peptide 3 (47 aa)
MARAVRGTSRFEKLMSCSFKISRDSDGVLTTTVSFEPRLSLKIGPYS*

Sequence

>CNT30260872
ATATAACAAACGCATGAATCAAAATAATTTTCATGAGCTAAGAAACATATTATGAAACAATTAAGGGCAAATCTTCCAAAAGAACAAAAAATGTTTTTAT
GACTAAAAGAATACACATAGAATACAATGACCAAAATATGTTTGTCAATTGTAGATGATAATTATATTCTGACTATAGTATATAATAATAAATAAATATT
TTAAAAGATATTGTTTGCAAAAAACTGAATTTTTGTTTTCGAAGAAAATATTTGAACTTTTTTTCTTAAAACTACAAAAAATTAAACTCTAAATTTAAAT
TAATTAACTTTTGAGATATAAATGTCTCTTACCTGTTTGATAAAATCTATTTTGGTTATTTTGACGTTTGAAGACTTTATTTTTATGATAAGTTCTTTTA
GTGGTAAGATATATCTCAACAATTACTTACCGCGAGTACGGCTTTGACATGGTTAATCGTAATGGGAACCTCCGAGTTGGCTTCTTGGTCCTTTAGCTTC
ATCAACTGTTGCAAAAAGTCTTTGCACTCACCATCATTCTTACTTCCTAGATTTGTCATCTTCTCAATGGCTCCGTCGAATATGGCATCGAGCTCACGAG
CATACACGCGCATCTGCTTCACGAGCCCTTGAAGATCAAATCTCGCTAGCCACGGAAAAAAATCTGAAACATTAGGCTCACCCAAAAGCCTAGTTATATC
AGAGACCACTCCTTTAAATTCTGTTCCAACACTCTCCATCTCCTCGGCCTTCACCGAACTTCCCCATAACATATTCGTCATTAGGTTCATCATCGTCACA
AACAACTGATCACCAACGTTCACCGCCGATTTTTCTCGACTTTTCTCGTATAAAAACCTCGTTCTCTCTCGGATCTCTTTGCGCCGTAGGGCGTAGAATG
AATCCAACGTTTTGCGGCTTAGTAGTTTGAGAACACAAACTTTTCTAAGCATTCTCCACTCCACACTGTACGGTAACCAAACAATGTCGAGACCACCATA
GCTAATGGCTCGAGCCGTGAGAGGGACGTCACGGTTTGAGAAGTTGATGTCTTGTTCTTTCAAGATCTCTCGGGATAGCGACGGAGTGTTGACCACGACG
GTTAGTTTTGAGCCAAGGTTGAGTTTGAAGATTGGACCGTATTCTTGAGCGAGGTCTCTGAAGTAGGTGTGAAGGTCCGGTTTAAGAAACGGGAGGTTTC
CGACGATAGGTAGCCCTCGGGGTCCAGGTGGTAGAGGCGGTTGCGGCGAGCGTTTGAGAAGGAACCAGAAAACTGTAATGATAGTAGTGAGAACGAGAAT
TGCGTAAGGAGGAACGTTCATTGTGTTGTCGGTGAAGAGGTTTGAGATCGGAGACATGTTTTTACAGCTGTTTGTAGAAACGCTGAGATTGACAAATGTT
GTTGTGTAGTGTTTCT