Detailed information on CNT30253210


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 6e-176

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225559Avena sativaHordeum vulgare62.0164.8488.52723forward

Expression of CNT30253210

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MARRPFLSSFTFSSANASGSSARPRGSKLPPGYSGSTISPSGPPATRYPSTAPMSTTWHAQIARML*

>peptide 2 (63 aa)
MTKSTQGMESGKSHNAFAQILVIYIVVVQTRLHNITVHREDSLQDSSVTCRGRSWWRMPMHCC*

>peptide 3 (61 aa)
MRASPKSVDDGRFFTTFPAKVEEETDMVVVAIGVYNRCVLFVFSWRVWRWRWFQRTHGRGI*

>peptide 4 (55 aa)
MADSSLPFQRRSRRRQTWWWWPLECITGVSCLCSPGECGGGGGFRGHTDVVFKGAE

>peptide 5 (41 aa)
EIARHTASVSLNCFVVEKLQQKGANKSQVCHIFIQRHICNK*

>peptide 6 (29 aa)
MAQRLWITSNSRFFAKVSGSAESPAVSQP*

Sequence

>CNT30253210
GAAATTGCAAGACACACCGCCTCAGTTTCACTGAATTGCTTTGTGGTGGAGAAACTTCAGCAAAAAGGGGCAAATAAATCGCAAGTGTGCCACATATTTA
TTCAGCGGCATATCTGCAACAAATGACTAAATCGACGCAAGGCATGGAATCTGGGAAATCTCACAATGCTTTTGCACAAATTCTCGTAATTTACATCGTG
GTAGTACAAACAAGACTACACAACATCACAGTTCACCGTGAGGATAGTCTCCAAGACAGCTCAGTTACTTGCCGGGGACGAAGTTGGTGGCGAATGCCCA
TGCATTGTTGTTGACGGGGTCGGAGATGTGGTCAGCAAGGTTCTCTAGTGGGCCCTTGCCGGTGACTATGGCTTGAACAAAGAAGCCAAACATCGAGAAC
ATGGCGAGGCGACCATTCTTGAGTTCCTTCACCTTTAGCTCGGCGAACGCCTCAGGGTCTTCAGCCAGGCCGAGAGGGTCAAAGCTGCCGCCTGGGTATA
GCGGGTCAACAATCTCGCCAAGTGGGCCACCGGCAACACGGTACCCCTCGACGGCACCCATGAGCACGACTTGGCATGCCCAAATAGCGAGAATGCTTTG
AGCGTGGACGAGGCTAGGGTTGCCGAGGTAGTCGAGGCCACCCTCACTGAAGATCTGGGAGCCAGCCTTGAACCAGACGGCCTCGCCAAACTTGACGCCA
TTGCGAGCGAGAAGTTCAGGGAAGACACAACCGAGTGCCCCGAGCATGGCCCAACGACTGTGGATCACCTCCAACTCTCGGTTCTTCGCGAAAGTCTCGG
GGTCAGCGGAAAGTCCAGCTGTGTCCCAGCCATAGTCACCTGGGAACTCGCCAGTTAGGTAGCTCGGGGGCTCACCGGATAGCGGGCCGAGGTAGAGCAC
ACGGTCAGCACCGTACCATGGGCTACTAGAGGAGACTTGCTTAGCCTTTGCTGCAGTCTTGCGCATCGTAATGCGGGCCTCGCCAAAAAGTGTGGACGAT
GGCAGATTCTTCACTACCTTTCCAGCGAAGGTCGAGGAGGAGACAGACATGGTGGTGGTGGCCATTGGAGTGTATAACCGGTGTGTCCTGTTTGTGTTCT
CCTGGAGAGTGTGGAGGTGGAGGTGGTTTCAGAGGACACACGGACGTGGTATTTAAGGGAGCGGAG