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Detailed information on CNT30252956


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 1e-159

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30722304Avena sativaTriticum spelta40.5810089.29392forward

Expression of CNT30252956

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRASPKSVDDGRFFTTFPAKVEEETDMVVVAIGVYNRCVLFVFSWRVWRWRWFQRTHGRGI*

>peptide 2 (50 aa)
HNAFAQILVIYIVVVQTRLHNITVHRDDSLQDSSVTCRGRSWWRMPMHCC*

>peptide 3 (56 aa)
MADSSLPFQRRSRRRQTWWWWPLECITGVSCLCSPGECGGGGGFRGHTDVVFKGAEV

>peptide 4 (29 aa)
MAQRLWITSNSRFFAKVSGSAESPAVSQP*

Sequence

>CNT30252956
TCACAATGCTTTTGCACAAATTCTCGTAATTTACATCGTGGTAGTACAAACAAGACTACACAACATCACAGTTCACCGTGACGATAGTCTCCAAGACAGC
TCAGTTACTTGCCGGGGACGAAGTTGGTGGCGAATGCCCATGCATTGTTGTTGACGGGGTCGGAGATGTGGTCAGCAAGGTTCTCTAGTGGGCCCTTGCC
GGTGACTATGGCTTGAACAAAGAAGCCNNNNNNNNNNGCGAACGCCTCAGGGTCTTCAGCCAGGCCGAGAGGGTCGAAGCTGCCGCCTGGGTATAGCGGG
TCAACAATCTCACCAAGTGGGCCTCCGGCAACACGGTACCCCTCGACGGCACCCATGAGCACGACTTGGCATGCCCAAATAGCGAGAATGCTTTGAGCGT
GGACGAGGCTAGGGTTGCCGAGGTAGTCGAGGCCACCCTCACTAAAGATCTGGGAGCCAGCCTTGAACCAAACGGCCTCGCCAAACTTCACGCCATTGCG
AGCGAGAAGTTCAGGGAAGACACAACCGAGTGCCCCGAGCATGGCCCAACGGCTGTGGATCACCTCCAACTCCCGGTTCTTCGCGAAAGTCTCAGGGTCA
GCAGAAAGTCCGGCTGTGTCCCAGCCATAGTCACCGGGGAACTCGCCGGTTAGGTAGCTCGGGGGCTCACCGGATAGCGGGCCGAGGTAGAGCACACGGT
CAGCACCGTACCATGGGCTACTAGAGGAGACTTGCTTAGCCTTTGCTGCAGTCTTGCGCATCGTAATGCGGGCCTCGCCAAAAAGTGTGGACGATGGCAG
ATTCTTCACTACCTTTCCAGCGAAGGTCGAGGAGGAGACAGACATGGTGGTGGTGGCCATTGGAGTGTATAACCGGTGTGTCCTGTTTGTGTTCTCCTGG
AGAGTGTGGAGGTGGAGGTGGTTTCAGAGGACACACGGACGTGGTATTTAAGGGAGCGGAGGTGAT