CANTATAdb - search

Detailed information on CNT30252099

BLAST search results

BLAST vs Swiss-Prot:
sp|Q03033|EF1A_WHEAT, E-value = 7e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30637620	Avena sativa	Capsicum annuum	46.41	12.45	85.36	239	forward

Expression of CNT30252099

Peptides detected in this lncRNA

>peptide 1 (51 aa)
PGTASSMDSWCISTDFTSVVSPVGPKVTSMPGLITPVSTRPTGTVPMPPIL*

>peptide 2 (63 aa)
TWHSLQHGLVVHLHRLHLSGQPSWAKSDKHARLDHSSLNTPHWHSSNATNLVDILKGKAEGLV*

Sequence

>CNT30252099
ACCTGGCACAGCCTCCAGCATGGACTCGTGGTGCATCTCCACAGACTTCACCTCAGTGGTCAGCCCAGTTGGGCCAAAAGTGACAAGCATGCCAGGCTTG
ATCACTCCAGTCTCAACACGCCCCACTGGCACAGTTCCAATGCCACCAATCTTGTAGACATCCTGAAGGGGAAGGCGGAGGGGCTTGTCTGAGGGCCTCT
TGGGCTCATTGATCTGGTCAAGCGCCTCAAGCAAGTTCCAATGCCACCAATCTTGTAGACATCCTGAAGGGGAAGGCGGAGGGGCTTGTCTGAGGGCCTC
TTGGGCTCATTGATCTGGTCAAGCGCCTCAAGCAAGGTTGGGCCCTTGTACCAATCAAGGTTGCTGGACCTCTCAATCATGTTGTCACCCTCGAAACCTG
AGATGGGGACAAATGGGACCTTGTCAGGGTTGTAGCCCACCTTCTTCAAGTAGGAGCCAACTTCCTTGACAATTTCTTCAAAACGGCCCTTGGAGTACTT
GGGAGTGGTGGCATC