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Detailed information on CNT30251678


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 6e-110

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30299798Avena sativaTriticum aestivum76.3763.6992.99556forward
CNT30393931Avena sativaTriticum turgidum76.3763.9891.19556forward
CNT30665006Avena sativaTriticum dicoccoides76.3774.7392.27556forward
CNT30685447Avena sativaTriticum urartu76.3764.594.42556forward

Expression of CNT30251678

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQREWMTSSSRFLAKVSGSAERPAVSQP*

>peptide 2 (35 aa)
MVMRPSPKGEALEAFTGVPAIAGEESAMVEAAIAR*

Sequence

>CNT30251678
CACACATGCAGCAGCAGCAGCATTCAGCAATGAAGTGGTCGGCCAAGCGCGCGCACGACGCAGCACACGCTAGAGGTTGAGCTTACTAATAAGCTCTTAC
TTGCCGGGGACGAAGTTGGTGGCGAAGGCCCATGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGCCGAGGGGGTCGAAGCTGCCTCCGGGGT
AGAGCGGGTCGACGATCTCACCGAGCGGTCCACCGGCGACGCGGTAGCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCT
CTGGGCGTGCACGAGGCTGGGGTTGCCGAGGTAGTCGAGGGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCGAGCTCGCGGTTCTTGGCGAAGGTC
TCGGGGTCGGCGGAGAGGCCGGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTGGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGA
GCACGCGGTCGGAGCCGTACCAGGGGCTGCCGGACGCGGACACCTTGGGCTTGGCGGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGGGAGGC
CCTGGAGGCCTTCACGGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTGGAGGCTGCCATTGCTCGCTAGTCTGAGGTGAGGTGCTTCGAGTGA
GCTCTCAGGTAGTAGTAGTAGATGGTGG