Detailed information on CNT30251534


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30142453Avena sativaLolium perenne36.9258.7191.76182reverse complement
CNT30711Avena sativaZea mays23.7348.5595.73117reverse complement
CNT3067881Avena sativaLeersia perrieri23.9431.8994.07118reverse complement
CNT30558076Avena sativaPanicum hallii21.9110.188.89108reverse complement

Expression of CNT30251534

Peptides detected in this lncRNA

>peptide 1 (55 aa)
AKPWRRRGGELDPNNRARGHPPTRPESRGSRVALRVKAKRAPLRAARSPHPPRQY*

>peptide 2 (34 aa)
MSQRASVPHSSCIAFALHSHLLVSSEMCPSSYWE*

>peptide 3 (42 aa)
RNPGAAVEANWTRTIGRAATHRRVQSPEAAASPSASRPSELL*

Sequence

>CNT30251534
GCGAAACCCTGGCGCCGCCGTGGAGGCGAACTGGACCCGAACAATAGGGCGCGCGGCCACCCACCGACGCGTCCAGAGTCCAGAGGCAGCCGCGTCGCCC
TCCGCGTCAAGGCCAAGCGAGCTCCTTTGAGGGCGGCCAGGTCTCCCCACCCACCTCGTCAGTACTAGTACTCGCGAATCTGCCTTCCCCAGACAGACCG
CGAGCCGAGCCCCGGCCACGGCCGCTCCCCCGAAGCCACCTCTCCTCCTTCCTTCCTCCCGTCCCCGCCGTCCGCGTCCGGCCCACCTATAAATAGCGCC
TCCTCTCCTCCCACACATCTCGCACCCCAGGGAAACAGGAAGCACGAGCAGCATATGTCACAAAGGGCCAGCGTCCCACACTCCTCCTGCATAGCCTTCG
CCCTCCATTCCCATCTCCTGGTATCCAGTGAGATGTGCCCTAGCTCCTATTGGGAATAGCCTCGCCCAAATCCGGCACCTTTTTTTTTTTTTT