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Detailed information on CNT3024540


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43697|TBB5_MAIZE, E-value = 1e-118

BLAST vs NONCODE:
NONPOPT002096, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30333708Populus trichocarpaCynara cardunculus18.0942.8483.29347forward

Expression of CNT3024540

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MIDYRSRNSNGAIIQTRTPIQNFSHQPHGLIFSY*

>peptide 2 (75 aa)
MLLSASVNSISSMPSPVYQCKKAFLLNIAVNCSLTRLNISWMEVEFPMKVDAIASPLGGISHTLDFTLLGIHSTK*

>peptide 3 (32 aa)
MAWVSSAHHVLGIPHLLGEFWDSQSPVLLRTT*

Sequence

>CNT3024540
CAAACACAACACATAATCCTTGAAAATGACTGGCGTGATAATCACATCAAAGGACACCGAGATTTAAATGATTGATTATAGGAGTAGAAATAGCAATGGA
GCTATAATTCAAACACGAACACCAATACAAAACTTCTCACATCAGCCACATGGCTTAATATTTAGCTACTGAACAAAAATTTCCCAACTCTAATTACTAT
TCAAACCGCCCAGACAGTGAAATTCACCACGCACATTTCAAAGCAGTAAAACATATTCATGCAGAATACGCTGTAAAAGCAAGTAGCAGATAGACTTTGC
ACAAATAATTACATCCCGGCAGCATCTTCTTCCTCGTCCTCATAATCAACTTCTTCATCAGCTGTTGCATCCTGGTACTGCTGATATTCAGAAACGAGGT
CATTCATGTTGCTCTCAGCTTCAGTGAATTCCATTTCATCCATGCCTTCTCCGGTGTACCAGTGCAAGAAAGCCTTCCTCCTGAACATAGCTGTGAATTG
CTCACTTACACGCCTGAACATCTCCTGGATGGAGGTTGAGTTTCCAATGAAGGTGGATGCCATAGCAAGTCCTCTTGGAGGAATATCACACACACTAGAC
TTCACATTGTTGGGGATCCACTCAACAAAGTAGGATGAATTCTTGTTCTGGACATTGATCATTTGTTCATCAACTTCCTTAGTGCTCATCTTACCCCGGA
ACATAGCGGAGGTTGAGTTTCCAATGAAGGTGGATGCCATAGCAAGTCCTCTCGGAGGAATATCACACACACTAGACTTCACATTGTTGGGGATCCACTC
AACAAAGTAGGATGAATTCTTGTTCTGGACATTGATCATTTGTTCATCAACTTCCTTAGTGCTCATCTTACCCCTGAACATAGCAGAAGCAGTCAGGTAG
CGACCATGGCGTGGGTCAGCAGCGCACATCATGTTCTTGGCATCCCACATCTGCTGGGTGAGTTCTGGGACAGTCAGAGCCCTGTACTGCTGAGAACCAC
GTGAGGTCAGAGGAGCAAATCCAACCATGAAAAAGTGCAGACGGGGGAAGGGGATGAGGTTCACTGCAAGCTTCCTAAGATCAGAGTTGAGCTGACCAGG
GAACCTGAGACAGCAGGTGACACCGCTCATTGTTGCAGAGATCAGATGATTCAGGTCGCCAACTGCAACAATCATTAACAATCCAAAGTTGATTCAGCAT
TTTTTTAATCTCAATTGAAGCAGAAAAACACAAAAAATAACCAAGCAATTTGAAAATAAACAGGCCAACTTCATAATAGACAGGACCCAAAACTTTTGTT
CCCTGAAAATTACCCCACTACACCATCAATCAAATTTTAAAATTGACAGTGTCATAAAATCAACCACCTAACATTTGGCACAACCACGTTTCATCAACCC
ATGCAATCACCTATATCCTACTAGATACATATTTAAGATCCATTGAGACAACCCCACATTGCTCCTCAGGCAGACAGAGATTAAGATACAGATTGCAACA
ACTCACAATGAAATAATTAAGTGACTGTCAACATAAGAGTAAAACTACAAAAAAAAATAAAAACACTTCAAAACGTCAATGCAGCTAATATTTGAACAAG
GCACCTTGTTAGCATGTGGAGAACACAAACAAACAACATGACCACGCGGCGTGGAACAGAAGTATAGCAGCAAGGAACAGGGGCACGTAGTTAAAAATGC
ACCTCTATCTCGATTCTGATTTCAAGCCATGATAAAGATTATACATTTCGGACAATAGATGAAAAAACCCAAACCCACCAGCCCAGCAAAATGAGGGAGC
TTATGAAAACAAATTATGGCTTAATCACAGATTGCTTCACCAAAATCTGAATGCATTATGCACCAAAAAGAAGCATGGTACTAAATTTGGGCAACAGACA
AATAAAGCTAGTTTCAAG