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Detailed information on CNT30333708


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H7U1|TBB2_ORYSJ, E-value = 2e-105

BLAST vs NONCODE:
NONBNAT005393, E-value = 9e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675224Cynara cardunculusSetaria viridis46.1745.0185.83374forward
CNT30522155Cynara cardunculusSetaria italica39.8836.7582.97323forward
CNT30641079Cynara cardunculusNymphaea colorata38.0241.4582.79308forward
CNT30534291Cynara cardunculusEucalyptus grandis26.4233.5982.24214forward
CNT30516889Cynara cardunculusJuglans regia23.2131.0785.64188forward
CNT30377262Cynara cardunculusArabidopsis thaliana43.0959.7685.96349forward
CNT30617295Cynara cardunculusSesamum indicum19.2638.0585.26156forward
CNT30728062Cynara cardunculusCorchorus capsularis36.9134.3383.28299forward
CNT30381383Cynara cardunculusManihot esculenta20.259.3384.76164forward
CNT30629386Cynara cardunculusVigna unguiculata11.7336.8288.4295forward
CNT30196370Cynara cardunculusPisum sativum23.2119.7382.45188forward
CNT30486254Cynara cardunculusOlea europaea21.4845.4387.93174forward
CNT30708222Cynara cardunculusGlycine max26.6753.681.48216forward
CNT30168132Cynara cardunculusPistacia vera13.727.0185.59111forward
CNT3092760Cynara cardunculusSolanum tuberosum23.2127.1781.91188forward
CNT30291318Cynara cardunculusTriticum aestivum31.7377.1885.99257forward
CNT30223001Cynara cardunculusHordeum vulgare18.453.685.23149forward
CNT30390564Cynara cardunculusTriticum turgidum12.7233.8886.41103forward
CNT30562825Cynara cardunculusActinidia chinensis35.1951.6384.56285forward
CNT30586804Cynara cardunculusMusa acuminata25.1926.4279.9204forward
CNT30542792Cynara cardunculusBrassica napus17.4132.4985.82141forward
CNT30511058Cynara cardunculusSolanum lycopersicum16.7956.985.29136forward
CNT30553024Cynara cardunculusOryza glaberrima23.9513.5984.02194forward
CNT30442409Cynara cardunculusAegilops tauschii54.6966.1282.39443forward
CNT30253208Cynara cardunculusAvena sativa47.5332.0381.56385forward
CNT30261872Cynara cardunculusBrassica rapa41.3637.8582.69335forward
CNT30614070Cynara cardunculusArabis alpina25.3114.8387.8205forward
CNT305432Cynara cardunculusZea mays23.3351.585.71189forward
CNT30608822Cynara cardunculusGossypium raimondii29.8836.1283.88242forward
CNT30209019Cynara cardunculusHelianthus annuus41.4840.2484.52336forward
CNT30627268Cynara cardunculusDaucus carota32.8421.4980.83266forward
CNT30681848Cynara cardunculusTriticum urartu46.6742.7185.19378forward
CNT30722476Cynara cardunculusTriticum spelta42.150.9782.11341forward
CNT30341625Cynara cardunculusEragrostis tef48.7740.5181.77395forward
CNT30364844Cynara cardunculusSorghum bicolor32.8461.0186.47266forward
CNT30595966Cynara cardunculusOryza meridionalis23.9531.6585.05194forward
CNT30369350Cynara cardunculusOryza glumipatula41.3648.284.48335forward
CNT30424412Cynara cardunculusPapaver somniferum50.7436.1880.54411forward
CNT30570854Cynara cardunculusVitis vinifera17.5370.6583.8142forward
CNT30706519Cynara cardunculusPrunus avium39.8838.9681.11323forward
CNT3033661Cynara cardunculusTheobroma cacao24.5795.6783.92199forward
CNT3057373Cynara cardunculusAmborella trichopoda28.0241.6583.26227forward
CNT3024540Cynara cardunculusPopulus trichocarpa42.8418.0983.29347forward
CNT30322043Cynara cardunculusAsparagus officinalis45.0643.6183.84365forward
CNT30332119Cynara cardunculusDioscorea rotundata25.3132.2885.37205forward
CNT30150001Cynara cardunculusBrachypodium distachyon10.6227.2288.3786forward
CNT3099978Cynara cardunculusOryza rufipogon34.9434.9484.45283forward
CNT30575061Cynara cardunculusOryza barthii49.1443.7883.92398forward
CNT30117026Cynara cardunculusOryza nivara29.1435.1283.9236forward

Expression of CNT30333708

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSWVSSTHHVLGIPHLLSEFRDSEGTVLLGST*

>peptide 2 (43 aa)
MKKWRRGNGMRFTASFRRSELSCPGNLRQQVTPDIVAEIRWFRS

>peptide 3 (75 aa)
MPSLDLLVGYHRRWTSRCSGSTPQSMTSSCFGRLASARRLLWCSSFHGKWQMPSSNGHVVGQQHTSCSWHPTFVE*

>peptide 4 (55 aa)
MLLSASVDAIFRPVGGISQTVDFTLFGIHSTKYDEFLFWTFSICSSTSLVLIFPR*

>peptide 5 (81 aa)
MFFPKTLFLITTCVWIKWQLRLQPLILNQNLHLHKNPFAFASYLSFIVLLFFLILSLLISCCILVLLILGNEIVHVAFSLS*

Sequence

>CNT30333708
AATAACTATCAAAAAATCCTCTAGGCATTTCATAGAGACAGCAGAGGGCAGAGAGTTAAAAACCATATACCAGCAATAAACACCCAAATCAAACTTAACA
ACAAAAGAAAACATTACTTATGATCCAAATTACACACAAATGTTTTTTCCCAAAACCCTGTTTCTCATTACTACTTGTGTTTGGATAAAATGGCAGTTGA
GATTACAACCACTGATACTTAACCAAAACCTCCACCTACATAAAAACCCATTTGCTTTCGCATCATACTTAAGCTTCATCGTACTCCTCTTCTTCCTCAT
ACTCTCCCTCCTCATCAGCTGTTGCATCCTGGTACTGCTGATACTCGGAAACGAGATCGTTCATGTTGCTTTCAGCCTCAGTTGATGCCATCTTTAGACC
TGTTGGTGGGATATCACAGACGGTGGACTTCACGTTGTTCGGGATCCACTCCACAAAGTATGACGAGTTCTTGTTTTGGACGTTTAGCATCTGCTCGTCG
ACTTCTTTGGTGCTCATCTTTCCACGGTAAATGGCAGATGCCGTCAAGTAACGGCCATGTCGTGGGTCAGCAGCACACATCATGTTCTTGGCATCCCACA
TTTGTTGAGTGAGTTCAGGGACAGTGAGGGCACGGTATTGCTGGGATCCACGTGATGTGAGAGGAGCGAAACCAACCATGAAGAAATGGAGACGCGGGAA
TGGGATGAGATTCACAGCAAGTTTCCGGAGATCAGAGTTGAGTTGCCCAGGAAACCTTAGACAGCAGGTGACTCCAGACATTGTGGCGGAAATAAGATGG
TTTAGATCAC