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Detailed information on CNT3024339


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 1e-140

BLAST vs NONCODE:
NONGMAT001702, E-value = 1e-158

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3059455Populus trichocarpaArabidopsis lyrata82.6647.9284.1610forward

Expression of CNT3024339

Peptides detected in this lncRNA

>peptide 1 (64 aa)
KNPLLIYIIASSCIILHSSLATLLGSRFGHLSTRSILFLHVLDHSHSNSLAHIPHSKTSKWGIL*

>peptide 2 (43 aa)
MGFVGIILIIPASPFFRNLGSFSNSFPDRLSILVRISANLTAM*

>peptide 3 (96 aa)
MMITWEVKFAASLAGSSFEFEATKPRFRSFTATFLTLNPTLSPGRASWSASWCISTDLTSVVSPVGPKVTIVPGLMTPVSTRPTGTVPIPPILYTS*

Sequence

>CNT3024339
CAAGAACCCACTCTTGATTTATATTATAGCATCTAGTTGCATCATCCTGCACAGTTCACTTGCCACCCTTCTTGGCAGCAGATTTGGTCACCTTAGCACT
AGAAGCATCCTTTTTCTCCACGTTCTTGATCACTCCCACAGCAACAGTCTGGCGCATATCCCTCACAGCAAAACGTCCAAGTGGGGGATACTCTGAGAAA
GTCTCCACCACCATGGGCTTCGTGGGAATCATCTTAATCATACCTGCATCACCGTTCTTCAGAAATTTAGGTTCCTTCTCCAACTCCTTCCCTGATCGCC
TGTCAATCTTGGTGAGGATCTCAGCAAATTTGACAGCAATGTGACAGGTGTGGCAGTCAAGAACAGGGGCGTAACCATTTCCGATCTGCCCAGGATGGTT
CATGATGATCACCTGGGAGGTGAAGTTCGCAGCCTCCTTGGCGGGATCATCCTTTGAGTTTGAGGCAACAAAACCACGCTTCAGATCCTTCACGGCAACA
TTCTTAACATTAAATCCAACATTGTCACCGGGAAGAGCCTCTTGGAGTGCTTCGTGGTGCATCTCAACAGACTTAACTTCAGTAGTTAGTCCAGTTGGCC
CGAAAGTGACAATCGTACCAGGCTTGATGACACCAGTTTCCACACGACCAACTGGGACCGTTCCAATACCACCAATCTTGTACACGTCCTGAAGGGGGAG
ACGGAGGGGCTTGTCCGAGGGCCTCTTGGGCTCCTGGA