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Detailed information on CNT3059455


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712097Arabidopsis lyrataGlycine max34.0936.3884.56434forward
CNT30647369Arabidopsis lyrataRosa chinensis30.8743.3885.75393forward
CNT30127375Arabidopsis lyrataCorymbia citriodora41.0893.7384.13523forward
CNT3024339Arabidopsis lyrataPopulus trichocarpa47.9282.6684.1610forward

Expression of CNT3059455

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MGVHFAPFLTAALVTLAPVGSFLSTLLMTPTATVCLMSLTAKRPSGGYSEKVSTTMGLVGVILTIPASPFFKNLGSFSISLPERLSILVKISENLTAM*

>peptide 2 (93 aa)
MMMTWEVKLAAPLAGSSFELEATYPLLRSFTATFLTLNPTLSPGSASRRDSWCISTDLTSVVNPVGAKVTTIPGLIIPVSTRPTGTVPIPPIL*

Sequence

>CNT3059455
GCTAAAAGAGCATGAGAGATTAAATTCAAAAGTGACACAACAGGAAAATGATAATATCCGGGGGAATGTGACAACATAACGAATCTCCAAAAAGGTTCAA
AATCGAAAACAATTCAAAAAGCAAAAAACAGACAGCTTGAGTGCCAAGTGGCCCCGCCACCTCCGATCAAGAACCCAGTTCCGGGAATTGAGCTCTGACG
GAGAAGAAACGAAGCTGTAACACATACAAGCGACCAAATACAAAACTAAAGTGAAAACCCTAAAACAGTCGTTTGATTCATCTGCGGATAGAGTTTTGAG
GATGGGAGTTCACTTCGCACCCTTCTTGACGGCAGCCTTGGTAACCTTGGCTCCAGTTGGGTCCTTCTTGTCAACACTCTTGATGACACCAACAGCAACA
GTCTGCCTCATGTCCCTCACGGCAAAACGTCCTAGTGGTGGGTACTCAGAGAAGGTCTCCACAACCATGGGCTTGGTCGGAGTCATCTTAACCATACCGG
CATCCCCATTCTTCAAAAACTTGGGCTCCTTCTCAATCTCCTTACCAGAACGCCTGTCAATCTTGGTCAAGATCTCAGAGAACTTGACTGCAATGTGAGA
GGTGTGGCAATCGAGGACAGGGGCGTAACCGTTACCAATCTGACCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGTTGGCTGCTCCCTTGGCAGGG
TCATCCTTTGAGTTGGAGGCGACGTACCCTCTCTTAAGATCCTTCACGGCAACATTCTTAACATTGAACCCAACATTGTCACCGGGAAGTGCCTCAAGAA
GAGACTCGTGGTGCATCTCAACAGACTTGACCTCAGTGGTCAACCCTGTGGGAGCAAAGGTCACGACCATACCAGGCTTGATCATACCAGTCTCAACACG
TCCCACTGGCACCGTTCCAATACCACCAATCTTGTAGACATCCTGAAGTGGGAGACGAAGGGGCTTGTCTGATGGCCTCTTGGGCTCGTTGATCTGGTCA
AGAGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCAAGGGGCTTGTCTGATGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGGAGAGTTGGTC
CCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCTCCCTCGAATCCAGAGATGGGCACAAACGGGATTTTGTCGGGGTTGTAACCAACCTT
CTTCAAGTAGGAAGACACCTCCTTGATGATTTCATCGTACCTGGCCTTGGAGTACCTGGGGGTGGTGGCATCC