« Back to Avena sativa search


Detailed information on CNT30241699


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG86|RS271_HORVU, E-value = 8e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316655Avena sativaCorylus avellana22.0971.7592.92226forward

Expression of CNT30241699

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSSVMVLPVRVFTKICILGRWGVASARCGGDAGGGGGVGFGLGGGWTPSGCCSRRGCGRPRAAYRRR*

>peptide 2 (31 aa)
PKFKLAWHHLSNRRTNIQETYYFRFSFNDKR*

>peptide 3 (73 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSSVMVLPVRVFTKICILAAVGGRLRALRRRRWWRRRGRVWVGWRSE

Sequence

>CNT30241699
CCAAAATTTAAACTCGCATGGCATCATCTGAGTAATAGACGAACAAATATCCAGGAAACATACTACTTCAGGTTCAGTTTTAACGACAAACGGTAGACAT
ATCTAAATGAGATGTAACCAACAGCTCAATTGAGTTCTCGATAGGTAGGGTAAAGTAAAGCATAGCGAACGCTGGGCCACCTCTAAGCCTTCTGGTTGTA
GACGTAGGTGAGGCCGCACTTGCCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAACGTCCCGGCGCCGCACTCGGCGTTGGGGCACTCCTTCCTGAGC
CTGGTGACCTTGCCGGTGGCGTCGTCGACCTTGTAGAACTGGAGGAGGGCGAGCTTCACCTTCTTGTGCTTGTGCTTTTGCTTCTTGGGCTTGGTATACG
TCTTCTTCTTGCGCTTCTTGGCGCCTCCGCGAAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTC
GAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCC
ACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGGGCGGTGGGGGGTCGCCTCCGCGCGCTGCGGCGGCGACGCTGGTG
GCGGCGGCGGGGTAGGGTTTGGGTTGGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAG
ATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCT
TGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCGGCGGTGGGGGGTCGCCTCCGCGCGCTGCGGCGGCGACGCTGGTGGCGGCGGCGGGGTAGGGT
TTGGGTTGGGTGGAGGAGTGAAG