Detailed information on CNT30239714


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369277Avena sativaOryza glumipatula57.5159.6990.03582forward

Expression of CNT30239714

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHREWITSSSRFLAKVSGSAESPAVSHP*

>peptide 2 (46 aa)
MVTRASPKRADDGRSFTAFPAKAGEESAMVVVAIALTVDVLCALQE*

>peptide 3 (38 aa)
MAGPSPPFRRRLGRRVPWWWSPLLLQLMCCVLSKSEAVV

>peptide 4 (79 aa)
MAYLPGTKLVAKAQALLLTGSARWSARFSRGPFPVTMACTKKPNMENMARRPFLSSLTLSSAKASGSSAKPRGSKLPPG*

>peptide 5 (68 aa)
PQNLVTCFHRINPRNLHHGSTSQTSCAHLTTCTVSLTPAAHRRGLNPQPYRWLICREQSWWRKPRHCC*

Sequence

>CNT30239714
GGCCTCAAAATCTAGTAACATGTTTCCATAGGATCAATCCTCGTAATTTACATCATGGTAGTACAAGTCAAACCAGTTGTGCACACTTGACCACGTGCAC
GGTCTCCCTGACACCTGCGGCTCACAGGCGTGGCCTTAATCCGCAGCCTTACAGATGGCTTATTTGCCGGGAACAAAGTTGGTGGCGAAAGCCCAGGCAT
TGTTGTTGACAGGGTCGGCCAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTTCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGC
GAGGCGGCCGTTCTTGAGCTCCTTAACCTTGAGCTCCGCGAAGGCCTCTGGGTCGTCGGCCAAGCCGAGGGGGTCGAAGCTGCCACCAGGGTAGAGAGGG
TCGACGATCTCACCGAGTGGGCCACCGGCAACACGGTACCCCTCAACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGT
GCACCAGGCTCGGGTTGCCGAGGTAGTCGAGGCCTCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCATACGGCCTCACCGAACTTGACGCCATTGCG
GGCGAGCAACTCAGGGAAGACGCATCCGAGGGCGCCGAGCATGGCCCACCGAGAGTGGATCACCTCGAGCTCCCGGTTCTTGGCAAAGGTCTCAGGGTCG
GCCGAGAGCCCGGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGT
CGGAGCCATACCATGGGCTGCCCGAGGACACCGGCTTGGCCTTAGCGGCGGTCTTGCGCATGGTGACGCGGGCCTCGCCGAAGAGGGCAGACGATGGCAG
GTCCTTCACCGCCTTTCCGGCGAAGGCTGGGGAGGAGAGTGCCATGGTGGTGGTCGCCATTGCTCTTACAGTTGATGTGTTGTGTGCTCTCCAAGAGTGA
GGCGGTGGTGTG