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Detailed information on CNT30238956


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 1e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201346Brassica oleraceaPisum sativum67.1966.0983.43682forward

Expression of CNT30238956

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MHLGYYLNLKHKGPLRSQPKGSQRKENTENRK*

>peptide 2 (45 aa)
MSLCWSGGMPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICICK

>peptide 3 (31 aa)
MKNIDTDDPIFAEANRDHLPSASTKLKEHQF*

Sequence

>CNT30238956
CGAGTTCAAGAAAATCTTTGATTCTCTCCTATCAACAGTAAACGTATCAGAGACGAGTCCATCGTAAATAATAGCAACGACTTGAAAGCATAGACAAAAG
TTCATAATGCACTTGGGTTATTATCTAAACTTGAAACATAAAGGACCATTACGATCCCAACCGAAAGGTTCACAACGAAAAGAAAATACGGAAAACAGAA
AATGAAAAACATTGACACAGACGATCCAATTTTTGCAGAAGCAAACAGAGATCACCTCCCAAGTGCATCAACAAAGCTCAAAGAACACCAGTTTTGACCA
CACAGATCAACAAGCTTAGAAGCTTCCACCACGAAGACGCAGCACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCTACCATCC
TCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCTATCGTGTCTGAGCTCT
CAACTTCCAAGGTTATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCATTCCACCACGGAGACGCAACACAAGGTGAAGGGTAGACTCCTTCTGGAT
ATTGTAATCCGCAAGCGTACGACCATCCTCGAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTCGCC
TTCACATTGTCAATCGTGTCAGAGCTCTCCACCTCCAAAGTTATTGTTTTGCCGGTGAGGGTCTTGACAAAAATCTGCATACCACCTCTTAGACGAAGCA
CAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTCCTTCCATCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGAGG
AATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGAGTTTTCACGAAA
ATTTGCATCTGCAAA