Detailed information on CNT30229651


BLAST search results

BLAST vs Swiss-Prot:
sp|Q05349|12KD_FRAAN, E-value = 2e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674772Ananas comosusSetaria viridis24.0720.0890.3852forward
CNT30589376Ananas comosusMusa acuminata20.3710.9297.7344forward

Expression of CNT30229651

Peptides detected in this lncRNA

>peptide 1 (70 aa)
LFTSRRRWGCWAGACRRGCSPGGTRCARRSPCAASTACLASQESSAWPASRSTSGSPCLRRRCSLLRQLHS

>peptide 2 (70 aa)
YLPVVDGGGVGLGLVEEVAPRVEHAAPDVHLVRRRRRVWRHRSRRRGRHRDRPLVALACAAAALSFVNFIQ

Sequence

>CNT30229651
GTTATTTACCAGTCGTAGACGGTGGGGGTGTTGGGCTGGGGCTTGTCGAAGAGGTTGCTCCCCGGGTGGAACACGCTGCGCCAGACGTTCACCTTGTGCG
GCGTCGACGGCGTGTTTGGCGTCACAGGAGTCGTCGGCGTGGCCGGCATCGAGATCGACCTCTGGTAGCCCTTGCCTGCGCCGCCGCTGCTCTCTCCTTC
GTCAACTTCATTCAAG