CANTATAdb - search

Detailed information on CNT30227084

BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 7e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30307765	Hordeum vulgare	Triticum aestivum	66.41	51.65	90.12	344	forward

Expression of CNT30227084

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MDHLQLTVLGEGLRVSREPRGVPAVIARELAAEDVRGSGELHRGGGERHGRRRHCLLPDGTEQAADVRLLLRLMGGCVRKRGARQEG*

>peptide 2 (66 aa)
MRTRFSSVYLPGTKLVAKAHALLLTGSSGKTQPSAPSMAQRQWITSSSRFLAKVSGSAESPAVSQP*

Sequence

>CNT30227084
TATAGACATTTCATGTTCCATATGGGCCCTCAATTGTAAACATCTTTGATAGTGTACAACATCAACGATCCGATATTAGTCATACATCCAGAGTACACAC
ATACTCATGAGAACTCGATTTTCAAGTGTTTACTTGCCGGGCACGAAGTTGGTGGCGAAGGCCCACGCGTTGTTGTTGACGGGCAGCTCGGGGAAGACGC
AGCCGAGCGCGCCGAGCATGGCCCAGCGGCAATGGATCACCTCCAGCTCACGGTTCTTGGCGAAGGTCTCCGGGTCAGCAGAGAGCCCCGCGGTGTCCCA
GCCGTAATCGCCCGGGAACTCGCCGCTGAGGACGTACGAGGCTCCGGCGAGCTTCATCGCGGGGGAGGAGAGCGCCATGGTCGTCGCCGCCATTGCTTGC
TGCCGGATGGAACAGAGCAAGCTGCTGATGTGCGGCTGCTGCTGCGACTGATGGGTGGCTGCGTGAGGAAGAGAGGGGCAAGGCAGGAAGGTTAAATACC
GGCCCGCGCGCGCCAAAC