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Detailed information on CNT30226697


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SU35|ERLL1_ARATH, E-value = 3e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30447788Hordeum vulgareSaccharum spontaneum21.519.8383.48115forward

Expression of CNT30226697

Peptides detected in this lncRNA

>peptide 1 (99 aa)
MGQVKLAGHFLPHWLSRRVRSMGTLSLMPRMLALMAVQRHTAASRSASPPRSGQHCSFAGTPILSFSRFSTLAHTPSFNVLIEQLPPPVDGTDGGRIGGV

>peptide 2 (30 aa)
FYSRYRGTCTSMYILLQYANHAFRYHNVIH*

>peptide 3 (44 aa)
MNCNRGNIRLVRAYDMQYLRVNRWIEGSHGTGEVGGALLAALVE*

Sequence

>CNT30226697
CTTTCTATTCCAGGTACCGAGGTACGTGTACAAGTATGTATATCCTTTTACAATATGCAAATCATGCATTTAGATACCATAACGTGATACATTGACATTG
ATCAAGCATGCATGCACGAGCGAGGGAGCCCATGCAAACGCCTGACATATGAACTGTAACAGAGGAAACATACGTTTGGTGCGCGCGTATGACATGCAAT
ACCTACGAGTAAATCGATGGATAGAAGGATCACATGGGACAGGTGAAGTTGGCGGGGCACTTCTTGCCGCACTGGTTGAGTAGGAGGGTGAGGTCGATGG
GGACGTTGAGCTTGATGCCGAGGATGTTGGCCCTGATGGCGGTGCAGAGGCACACGGCAGCGTCGAGGTCGGCGAGCCCGCCCAGGAGTGGGCAGCACTG
CTCGTTCGCCGGCACGCCAATCTTAAGCTTCAGCAGGTTCAGCACGTTGGCGCACACGCCCAGCTTCAACGTGTTGATCGAGCAGCTGCCCCCGCCGGTC
GACGGCACGGACGGTGGAAGGATCGGCGGGGTGGG