Detailed information on CNT30222533


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596829Hordeum vulgareOryza meridionalis39.8121.4493.36211reverse complement
CNT30150577Hordeum vulgareBrachypodium distachyon16.4236.2596.5587forward
CNT30104567Hordeum vulgareOryza rufipogon18.6839.7694.9599reverse complement

Expression of CNT30222533

Peptides detected in this lncRNA

>peptide 1 (45 aa)
GSNPIVGFFFLYRCSTNKNLFFSELNGESRIFYVFYLTILLDTKQ*

>peptide 2 (47 aa)
RFKSDSRLFFSLSMFYEQESLFFRIKWRIQDLLCFLPYYFARYKTIK*

>peptide 3 (61 aa)
MYSVIKYKWHNFFCRNILAIHFHFICTPGKLEFSSKWSLFICMKYIYEIRMWSSLEFHVIQ*

Sequence

>CNT30222533
CGGTTCAAATCCGATAGTCGGCTTTTTTTTTCTCTATCGATGTTCTACGAACAAGAATCTCTTTTTTTCCGAATTAAATGGAGAATCCAGGATCTTTTAT
GTTTTTTACCTTACTATTTTGCTAGATACAAAACAATAAAATAAATAATATATATACAAAAAATACAAAAAATACAGATTTTGATGAAATTCCATTTTTT
GTGGTACTTTAGTTGATTTTACTCTGTTTATCCTGTAGTTTAATTCAGTTTTAATTTCGATGTATTCTGTTATAAAGTATAAGTGGCATAATTTTTTTTG
TAGGAATATTTTAGCAATTCATTTTCATTTCATTTGTACCCCTGGTAAACTAGAATTTTCGTCGAAATGGTCTCTATTCATATGTATGAAATACATATAT
GAAATACGTATGTGGAGTTCCCTAGAATTTCATGTGATTCAGTAAACAGAATATAGATTCCATGATTGCTAGATCAATCCGTAGGGATTGATGAAGAGTG
AGCTGATAATGGAATTTTTCTTTGATAAAC