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Detailed information on CNT3022146


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 8e-156

BLAST vs NONCODE:
NONMEST001181, E-value = 5e-149

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30605737Populus trichocarpaGossypium raimondii86.1186.2284.63657forward

Expression of CNT3022146

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MKGRLLLNVVVGKGTAILKLLASKNKPLLVWWDPLLVLDLGLYIINSVRAFHLKGDGLASESLDEDLH

>peptide 2 (44 aa)
MPSLSWILAFTLSMVSELSTSKVIVLPVRVLTKICMPPLNRSTK*

>peptide 3 (31 aa)
MVSELSTSRVMVFPVKVLTKICIPPRRRSTK*

>peptide 4 (32 aa)
HNKRSIYCIKNLICIDIKACNGMALNSHSKQY*

Sequence

>CNT3022146
TGCACAACAAAAGGAGCATATATTGCATAAAAAATCTTATTTGCATAGATATTAAGGCTTGCAATGGAATGGCCCTTAACAGCCACTCCAAACAGTACTA
GGTGAAGTGTGGACTCCTTCTGGATATTGTAGTCTGCCAGGGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAACCTTTGTTGGTCTGGGGGGAT
ACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCTGAGCTCTCGACCTCCAGAGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAAATC
TGCATTCCTCCACGGAGACGCAGCACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTCCCATCTTCAAGCTGCTTCCCAGCAA
AAATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCAATGGTATCAGAGCTCTCCACCTCCAAGGTGATTGT
CTTGCCAGTAAGGGTCTTAACAAAGATCTGCATGCCACCTCTCAATCGGAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTA
CGGCCATCCTCAAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTTACATTATCAATAGTGT
CAGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCATCT