Detailed information on CNT30202570


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2VEF8|PSAJ_SOLTU, E-value = 6e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30145466Helianthus annuusMedicago truncatula18.5838.7285.61139reverse complement

Expression of CNT30202570

Peptides detected in this lncRNA

>peptide 1 (48 aa)
HEPPLDFSFTQLFLFQSETKKKKGRKKQNRICNLLSSYARFHYNQYRK*

>peptide 2 (65 aa)
MFLDLALKNLLHFIVIHKIIHIEMYNDLVNKIYFLLNTEKNDRFFSNIPPQDSAIFPWGSVPYFI*

>peptide 3 (91 aa)
MNLLWIFHLLNSSSFNPKRKRRKEGKNKIEFVTCYPLMQDFTTINIGNKIERFLTFQIPNTNNSTVFHISILYNTLSLEPLFVFDFHRNFI*

>peptide 4 (39 aa)
MHFYSFSFLPYSKKGKKEKRGGWYLIVSLIFFIPSRVNN*

Sequence

>CNT30202570
CATGAACCTCCTTTGGATTTTTCATTTACTCAACTCTTCCTCTTTCAATCCGAAACGAAAAAGAAGAAAGGAAGGAAAAAACAAAATAGAATTTGTAACT
TGCTATCCTCTTATGCAAGATTTCACTACAATCAATATAGGAAATAAGATAGAAAGATTTCTAACCTTTCAAATACCAAATACAAATAACAGTACAGTAT
TTCATATAAGTATCTTGTATAATACTCTTTCCCTAGAACCACTGTTTGTATTCGACTTCCATAGAAATTTCATATGAATTTAATTCCAACCCGACCCCGA
GTCTCACAGTTGTTGAATGCACTTTTATTCTTTCTCTTTCCTCCCTTATTCTAAAAAAGGGAAAAAAGAGAAAAGAGGGGGCTGGTATTTAATTGTATCT
CTAATCTTCTTTATTCCTTCCCGCGTCAATAACTAGAAAAAGGGGAACGTCAATGCATCCGGGAAAAAACGATTAATCTCTATCAATAAACCTGCCAAAG
CACCGAACCATAGAGTACTTAGTACCGGTGCCACGGAAAGATATGTTTTTAGATCTCGCATTGAAAAACCTCCTTCATTTTATTGTAATACATAAGATAA
TACATATTGAAATGTACAATGATCTAGTAAATAAGATTTACTTTTTGTTAAATACAGAAAAAAACGACCGTTTCTTCTCCAATATTCCCCCACAAGACTC
AGCTATTTTTCCTTGGGGTTCCGTTCCATATTTCATATAGATAGAAGT