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Detailed information on CNT30199661


BLAST search results

BLAST vs Swiss-Prot:
sp|P11703|RPOB_SPIOL, E-value = 3e-144

BLAST vs NONCODE:
NONMEST001055, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30543275Pisum sativumBrassica napus97.572.5488.08663forward
CNT3082978Pisum sativumBrassica juncea99.568.3488.18677forward
CNT30577406Pisum sativumOryza barthii27.068.3684.24184forward

Expression of CNT30199661

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MDSMFVYWPHIIQKTQVFWKPLVHISHQKVLFDNVYLAYSRLTLVNIPISVLHSFEKGPLMD*

Sequence

>CNT30199661
ATTTTATCATCAACTTGATGAATTAATTTCAAGATATAAGGCTTTCCTATTATAACGGGCTGTTCAAAAGCATTCCCTGTTCTTCCATCAAATATTCTGC
TCTTTCCCGAATACTCGGGTTCAAATATCCATGGATTCGATGTTTGTTTACTGGCCTCATATAATTCAGAAAACACAAGTTTTCTGGAAGCCTCTTGTTC
ATATCTCTCATCAAAAGGTGCTATTCGATAATGTCTATTTAGCATACTCCCGGCTAACCCTAGTGAACATTCCAATATCTGTCCTACATTCATTCGAGAA
GGGACCCCTAATGGATTGAAGACCATATCAACGGGTCTTCCATCTTGCAAATAAGGCATATCCTGTCTAGACAAAATCTTTGAAACGATGCCTTTATTTC
CATGTCTCCCGGCCACTTTATCACCTACTTTGATTTCACGTTTCTGTGAAATATATATATGAATCGTTTCTGGATTATAGCTAGAACCCGCTTTTTTGTG
GATCCATCTCACATCAATAGCTCGGCCCCTACCACCTATAGGTAGTTTTAGACAAGTTTCCTTTGAGGTGGATACCTGAATCCCAAGTATAGCTCGTAAT
AATCTATCTTCCGGGGCATATGAGGATTCTTTTGCCATTTGAGGCGTTAATTTACCCACTAAAGTATCACCCGTTTCTAC