Detailed information on CNT30190524


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 6e-49

BLAST vs NONCODE:
NONSTUT000620, E-value = 7e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30495775Secale cerealeDigitaria exilis49.7944.1791.91235forward

Expression of CNT30190524

Peptides detected in this lncRNA

>peptide 1 (44 aa)
AQYTKPTAKINQQILILSSLIHYLKILLCQQRFQPTDNTGFIVH*

>peptide 2 (98 aa)
MNGRHHPPDDQDKPAGQMPGQLLTTAETEHQVEGGLLLDVIVRESAAILQLLASKDQALLVRRNALLVLDLGLDIVDGVRRLHLKGDGLARQCLHKDLH

>peptide 3 (35 aa)
MPSLSWILALTLSMVSDDSTSRVMVLPVSVFTKICI

>peptide 4 (36 aa)
TIYKTNSKDKPTDSYLKFTYSLLKDTAVPATVSTNR*

Sequence

>CNT30190524
GCACAATATACAAAACCAACAGCAAAGATAAACCAACAGATTCTTATCTTAAGTTCACTTATTCATTACTTAAAGATACTGCTGTGCCAGCAACGGTTTC
AACCAACAGATAACACGGGATTCATAGTTCATTAAACCTACACAGTAGGACTGACACGAACGAGACAGTTCAAATGAACGGCAGGCACCACCCACCGGAC
GACCAAGATAAACCAGCAGGTCAAATGCCAGGGCAATTACTGACCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCC
GCGAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT
CGATGGTGTCAGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCATCT