Detailed information on CNT30189120


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 4e-176

BLAST vs NONCODE:
NONSTUT001352, E-value = 1e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30302216Secale cerealeTriticum aestivum59.993.7492.47584forward

Expression of CNT30189120

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MPQGLQPSQEGRSCRLGRVGRRSHRVGRRQRGTPRRHP*

>peptide 2 (32 aa)
SCIAFAKNSRNLHHGSTTETAQQYASRRAQSS*

>peptide 3 (50 aa)
MVTRASPKRAKVGTFFTALPAKVEEERDMVAAAIGKLRKVSAVLYGFSKR*

>peptide 4 (29 aa)
MAQRQWITSNSRFLEKVSGSAESPAVSQP*

>peptide 5 (77 aa)
LALLLPKILVIYIMVVQPRLHNNTLRGVHNLLDILLAGDKVGCERPCVVADRVSDVVGEVLKWALARDDSLDKEAEH*

>peptide 6 (57 aa)
MWSARFSSGPLPVTIAWTKKPNIENMARRPFLISFTLSSANASGSSAKPRGSKLPPG*

Sequence

>CNT30189120
TCTTGCATTGCTTTTGCCAAAAATTCTCGTAATTTACATCATGGTAGTACAACCGAGACTGCACAACAATACGCTTCGCGGCGTGCACAATCTTCTTGAC
ATCTTACTTGCCGGGGACAAAGTTGGTTGCGAACGCCCATGCGTTGTTGCTGACAGGGTCAGCGATGTGGTCGGCGAGGTTCTCAAGTGGGCCCTTGCCC
GTGACGATAGCTTGGACAAAGAAGCCGAACATTGAGAACATGGCGAGGCGACCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAATGCCTCAGGGTCTT
CAGCCAAGCCAAGAGGGTCGAAGCTGCCGCCTGGGTAGAGTGGGTCGACGATCTCACCGAGTGGGCCGCCGGCAACGCGGTACCCCTCGACGGCACCCAT
GAGCACGACCTGGCATGCCCAAATAGCTAGGATGCTTTGCGCGTGCACAAGGCTGGGGTTGCCGAGGTAGTCGAGACCACCCTCACTAAAGATCTGGGAG
CCGGCCTTGAACCAAACAGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAACTCAGGGAAGACACAACCAAGTGCACCAAGCATGGCCCAACGACAGT
GGATCACCTCTAACTCCCGGTTCTTGGAGAAGGTCTCAGGGTCAGCTGAAAGTCCGGCAGTGTCCCAACCATAGTCGCCAGGGAACTCACCGGTCAAGTA
GCTCGGGGGCTCACCGGAGAGTGGGCCGAGGTAGAGCACACGGTCAGCACCGTACCATGGGCTGCTAGAGGAAACCTGCTTCGCCTTCGCTGCGGTCTTG
CGCATGGTGACACGGGCCTCACCAAAGAGAGCCAAAGTTGGTACGTTCTTCACGGCCTTGCCGGCAAAGGTCGAGGAGGAGAGGGACATGGTGGCTGCGG
CCATTGGAAAGCTAAGAAAAGTGTCCGCTGTGTTGTATGGGTTCTCAAAGAGATGAGTGAGTGTGGAGATGATTT