« Back to Zea mays search


Detailed information on CNT3016170


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30655402Zea maysRosa chinensis11.7531.4796.26107reverse complement
CNT30621619Zea maysCajanus cajan8.2334.498.6775forward
CNT30104538Zea maysOryza rufipogon14.3833.3398.47131forward

Expression of CNT3016170

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MSEDLPSPLVSYQGLSSHLWRKKSIPSHPASPRGVKVPLGDCQSTRSWQSFSHWTTSIHPPT*

>peptide 2 (54 aa)
PHDLPLPARLILSSLEAADPSVAFKTIVPSSVSLHPLRLLWVASHRRHLMKMNE*

Sequence

>CNT3016170
CCGCACGATCTTCCTCTTCCTGCCCGACTCATTTTGTCTTCACTGGAAGCTGCTGATCCCAGCGTAGCATTCAAGACAATTGTTCCTTCTTCGGTCTCCC
TCCACCCCCTTCGTTTGTTGTGGGTCGCGTCTCACCGCAGGCACTTAATGAAAATGAATGAGTGAAGATCTTCCTTCCCCCCTTGTGTCTTACCAAGGAC
TGAGTTCCCACTTGTGGCGAAAAAAAAGTATACCATCCCACCCGGCCTCCCCCCGGGGGGTTAAGGTTCCTCTCGGAGACTGCCAGTCTACAAGAAGCTG
GCAGAGCTTTAGCCATTGGACCACATCCATCCATCCTCCTACCTAAACAGTGACGCCTTTTCTTGTTCGTTCTTCGAATTACGCTAGTGGAGACTAATTC
CTTCCGGCTAATGAAGATACTACCCCAGTCTTCCCATTCATTCCCAGTGGATCCTTTTCATTGAACGAACCAAGTTCACCTATACGAGAGTGAGGAATAG
AAATCCTACAATCAACTTCCCACTTTTTATGTCCCGTTTGACGATTCTGCTGCGTCTTTAGAAAAGAAAAAGGAGAAGGACAGGGTCAGAAAAGCGATAA
CTATCAATTCGAATTCAGAATGAATCAAATCTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAG
GAAGAACGGACTTAAGGAAGCTGACTCTCGTTCTTTGGACCAACCAACCGAAAAGAAAAAAAGTTAGTCACTTTTTCTCTTTTCCGGGAGAAAGGGTGAC
GATAGCAATCCCCTTTGCCTCCCCGGCCGGGGAGCCCCCAGGACAGGACAAGGGGGGCGGCGGGGATTAATAAAGAATGGGTTGGCAAATATCTCACTTA
ATGGTGGGAGG