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Detailed information on CNT30146727


BLAST search results

BLAST vs Swiss-Prot:
sp|P42067|TIP1_MEDSA, E-value = 3e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3093986Medicago truncatulaSolanum tuberosum20.827.0485.25122forward
CNT30643380Medicago truncatulaCannabis sativa32.4240.3484.21190forward

Expression of CNT30146727

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MDAPVKAPPTKMLAPTMKPIAIGAIIPMLPFFGSTAVAPKVTAGLTCPPEMLAPTETATKRANAWAMEAEMRPAGVSG*

>peptide 2 (85 aa)
MSTGDVSTNGDSNKESECMGDGGRDETGRGVWVSCLLRCSYGDVSDRHVEIIAFVNKHSLFFFSYCESAFWFSLLLVFVSYLVCYL

Sequence

>CNT30146727
AAAAGAAAGAAATCATCGAGGAATTCAATAATACAGAATTTCAAATTTCATTTCCCATCTAGTAGTCAGTAGTTGGGAGCTGCTCGTGGGTGCTGTTGAT
GAAGAGAACCTCATAGACAAGTCCAGCAATTCCACCACCGATAAGTGGGCCAGCCCAGTAGACCCAGCCCGAATGACACTGCTGGGTTCATGGATGCTCC
GGTGAAGGCTCCACCAACCAAAATGTTAGCACCAACGATGAAACCAATAGCAATTGGTGCAATAATTCCAATGTTACCCTTCTTTGGGTCAACGGCTGTA
GCACCGAAGGTGACAGCGGGGTTGACATGTCCACCGGAGATGTTAGCACCAACGGAGACAGCAACAAAGAGAGCGAATGCATGGGCGATGGAGGCAGAGA
TGAGACCGGCAGGGGTGTCTGGGTGAGTTGCCTCTTGAGGTGTTCCTACGGCGATGTTTCTGATAGGCATGTTGAAATAATCGCTTTTGTTAACAAACAC
TCACTCTTTTTTTTTAGTTACTGTGAAAGCGCTTTCTGGTTTTCGCTTCTGCTTGTTTTCGTTTCCTATCTTGTGTGTTACTTATA