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Detailed information on CNT30134912


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01899|HSP7M_PHAVU, E-value = 2e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3070359Lolium perenneQuercus suber14.0825.2585.7177forward
CNT3055024Lolium perenneAmborella trichopoda21.7644.483.19119forward

Expression of CNT30134912

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MHQLGSVRTAFHLLFQPKRHHWEPSQFYMVPFSSPSASAGHQSAVLSYASYQRRYSVGLSQIDVWPEFQQAAPPFD*

>peptide 2 (84 aa)
TSKVKYSYQTFLVVCSIRKSSSSWFVDDPLDIKSSNSTSILGCLTLSIIEVSWNCDHSLGNRFAKISFSSLLHLGQYKCTNLAR*

>peptide 3 (44 aa)
PPPRSNTAIKPSLLFVPYERAAAVGSLMILWTSSPAIRPASLVA*

Sequence

>CNT30134912
CCACCTCCAAGGTCAAATACAGCTATCAAACCTTCCTTGTTGTTTGTTCCATACGAAAGAGCAGCAGCAGTTGGTTCGTTGATGATCCTTTGGACATCAA
GTCCAGCAATTCGACCAGCATCCTTGGTTGCCTGACGCTGAGCATCATTGAAGTAAGCTGGAACTGTGATCACAGCCTTGGAAACAGATTTGCCAAGATA
AGCTTCAGCAGTCTCCTTCATCTTGGTCAATACAAATGCACCAACTTGGCTCGGTGAGAACTGCTTTCCATCTGTTGTTTCAACCCAAGCGTCACCATTG
GGAGCCTTCACAATTTTATATGGTACCATTTTCATCTCCTTCTGCGTCTGCGGGTCATCAAAGCGCCGTCCTATCATACGCTTCGTACCAAAGAAGGTAT
TCTGTGGGTTTGTCACAGATTGACGTTTGGCCGGAGTTCCAACAAGCCGCTCCCCCTTTTGACTGAAAGCAACAACTGATGGTGTCGTCCTAGTGCCTTC
TGAATTCTCTATCACTTTTGCACTCTGCAGCCATTTTCTCATTTATG