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Detailed information on CNT30126889


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SSN3|TIR_ARATH, E-value = 2e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30527931Corymbia citriodoraEucalyptus grandis49.2319.3684.68705forward

Expression of CNT30126889

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MASAPPVAWWMGNSFTLVKSCEIPICKAGLGPTRVKSKKT*

>peptide 2 (39 aa)
MGMQIFESLMAWKISRPISSPTSIPCLSMKTLIPLSSRV*

>peptide 3 (38 aa)
MIRYMHTRYLKLNEHFPSNQMCKFSVAVSGHKTLSSEL*

Sequence

>CNT30126889
TACTTCATTCACTGATTCATCCATTCCAATTAGATGATCAGATATATGCACACAAGATACCTTAAGCTTAACGAGCACTTTCCGAGCAATCAAATGTGCA
AGTTCTCCGTGGCTGTGTCAGGACACAAAACATTGTCAAGTGAATTATAAGATTGGTGGCAAACTTTTTCACTTGCAAGATCAAACAAGACGCTGGACCC
ATCAAACAAAAGAGTAAATACATGATTCAATATCGTTGTGTTTAATCTAGGGCAAAAGGTAATCCTTGTGTTTTGAGACAATGGAGCGTAGAATTCAATG
CAATATCCATCAAAAATTTTAGTCCAGAGCTAAGAAAAAATTGTGCTCTTCAAATCATTGTCCGCCTTCAAGCAAAAGAAACATAAAGAAAAGGGAAGAG
GGGGTTGAGTGAGTCAACATACCCTGTGTTCTTGGTGTCCCATCCCTTGATTCTAGTAACTTCCTTGAGCGCCTCTGCCCAACGCTGCACAATCTCAGCC
CCACGTTTTTCTTTATGCAGAGTTAATGCATCTGCATACACTTTGGTTTCGAGCTTCACGTCAGAGGGTTCCACATCATAGAAAATGGGCATAACCTCCA
GTTCGTTGGTTTTCCTACGCTGCATCATGTGTTCTAGCTCACGCAGGCACCAGCTACTGGAGGCATAATTTCTGGAGAAGATGGGAATGCAGATTTTCGA
GTCATTGATGGCTTGGAAAATCTCGAGACCGATCTCTTCACCAACGTCAATCCCCTGCTTGTCTATGAAAACACTGATACCCTTATCTAGTAGGGTATGA
TAGAGAGAATCTGTGAAAGTAGCACGAGTATCCGGACCTCGGAAACTCAAGAACACTTCATACTCAGTACTCGATGAGCCATGGCTTGTGGATCTAGTTT
CCGGAGAAGAGCTCCTTTTCCTTTTCATCTTAGCCGCGTCTGCTAAAATCCTGAAAGCAAATCACAAAAAATTTGACATGCTCTGACAAGGGCCAACGAG
CGATGGTCAGGTAGGTAAGCGACGCTCACTTTCCATTTCCATCATGTTGCGGCATTGATCAAGAGAAATTGCAGACATATGATTGAAGGACTAATAAATG
GCCTCAGCGCCACCAGTTGCTTGGTGGATGGGAAATTCGTTTACATTAGTTAAGTCATGTGAAATTCCGATTTGCAAGGCTGGCCTGGGGCCTACCAGAG
TCAAGTCTAAGAAAACCTAAAAGAAGGAAGGCAAGTCGTATCATTGCTGTAGAAACAGTATATTAAATCAAATGACATAAAATAAAATAGAACAGAAGGA
GGTAATCCCCATGATTGGAGAAGTTTTCTTAGGACTTATTTTTTTGTGCTTTTAGAAAGCAAAACTGTTTACTTTATTGTTAAAATTTAAAATGTTTATT
CAAGTATAAAAAATTATATGTAAATTACTTAT