« Back to Physcomitrium patens search


Detailed information on CNT30124731


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 5e-79

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30525214Physcomitrium patensPhaseolus vulgaris76.8545.4980.75883forward

Expression of CNT30124731

Peptides detected in this lncRNA

>peptide 1 (64 aa)
EQFTDVAKALFKFHIRHKIGGTFCSIISHSTDHPGAAAPSEGWIPFGCCSQPMYDHPPIASQRR*

>peptide 2 (53 aa)
MPSLSWIFVFTLSIVSELSTSRVIVFPVKVFTKICIPPRNLSTKCKVDSFWML*

Sequence

>CNT30124731
GAACAATTTACAGACGTAGCCAAGGCTTTATTTAAATTTCATATACGGCACAAAATAGGAGGTACATTCTGTTCAATAATTAGTCATTCTACAGACCACC
CCGGAGCCGCAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGCCAATGTACGACCATCCTCCAATTGCTTCCCAGCGAAGATGAGACGC
TGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGAATCTTCGTCTTTACATTGTCAATTGTATCCGAGCTCTCGACCTCGAGGGTAATTGTCTTCCCCGTCA
AGGTCTTCACGAAGATCTGCATGCCTCCCCTCAACCTAAGCACTAAGTGTAAAGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGCCCGTCTTC
CAATTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCGGGCGGGATGCCCTCCTTATCCTGGATCTTTGTCTTCACATTATCAATTGTGTCCGAGCTCTCT
ACCTCGAGAGTAATCGTCTTCCCTGTCAAGGTCTTCACAAAAATCTGCATTCCTCCCCGCAACCTAAGCACCAAGTGCAAGGTAGACTCTTTTTGGATGT
TGTAGTCGGCAAGGGTGCGCCCATCCTCCAACTGCTTCCCAGCAAAAATCAGCCTCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGAATCTTTGTCTT
CACGTTGTCAATTGTGTCTGAGCTCTCGACCTCGAGGGTAATCGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCATGCCTCCCCGCAACCTAAGCACC
AAGTGCAAAGTGGACTCCTTCTGTATGTTGTAATCCGCCAGCGTTCTACCGTCCTCCAATTGCTTGCCCGCAAAGATCAACCTCTGCTGGTCAGGAGGAA
TCCCCTCCTTATCCTGGATCTTCGTCTTCACGTTATCGATTGTATCGGAGCTCTCCACCTCGAGGGTGATGGTCTTCCCAGTCAAGGTCTTTACAAAGAT
CTGCATCTTGAACTAAAAGATAACTGAAAGCAGTAATTGAGGAGATATGTAAGAGAAAAACCCAAGCTCCCTCTCACGCTAGCTTCTTCACAGCAACACG
AACCTCTCCTACTCACTTCCACAATCAAGAGGTAGAAAGTAACAAATTC