Detailed information on CNT30116945


BLAST search results

BLAST vs Swiss-Prot:
sp|P15192|CB22_PINSY, E-value = 9e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554318Oryza nivaraOryza glaberrima10094.6699.54656forward

Expression of CNT30116945

Peptides detected in this lncRNA

>peptide 1 (58 aa)
VKSMQCAYVHSQSHSLSQIPRSIDRCTSGCINSSSWVFLYYKSPPCKSPLTTNPALLI*

>peptide 2 (46 aa)
MTSTSIQISVEIENGSGCPRNVLAAAATDDAMAAPLLLLLLREYVGG

>peptide 3 (42 aa)
MCIHSHTHLVKYQDRSIDVQVDALIHHLGCSYITNHHHASRH*

>peptide 4 (34 aa)
MVVWSGSLRRACLISASCSRSFFSGSDANPSGSK*

>peptide 5 (37 aa)
MQVAINHQPSSPNLSSNQQKDDLSSLHTLPARSSSQN*

>peptide 6 (42 aa)
MTSPLSIPSQLARHHKTKPRARTHTNASIPFELRAKELKLRG*

Sequence

>CNT30116945
AGGTAAAGTCTATGCAGTGTGCATATGTGCATTCACAGTCACACTCACTTAGTCAAATACCAAGATCGATCGATCGATGTACAAGTGGATGCATTAATTC
ATCATCTTGGGTGTTCTTATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACCCAGCTCTCCTAATTTAAGTAGTAATCAACAAAAGGATG
ACCTCTCCTCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACCGCGCGCGCGAACGCACACCAACGCATCGATCCCGTTTGAATTGCGCG
CGAAAGAGCTTAAATTAAGAGGATGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGCC
GCTCCTTCTTCTCCGGGTCCGACGCCAACCCGAGCGGGTCGAAGTAGGACCCCCCCGGGTACAGCCTCTTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAA
CTCAATGTAGCCGATGACGAGCACCTCGATCCAGATCAGCGTCGAGATCGAGAACGGCAGCGGCTGCCCCAGGAACGTGCTCGCCGCCGCTGCCACCGAC
GACGCCATGGCTGCTCCTCTCCTTCTTCTCCTTCTTCGAGAATATGTGGGTGGTGG