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Detailed information on CNT3011397


BLAST search results

BLAST vs Swiss-Prot:
sp|P06671|CB22_MAIZE, E-value = 5e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187012Zea maysSecale cereale41.5736.9188.52244forward
CNT30603508Zea maysOryza punctata43.9533.0388.76258forward

Expression of CNT3011397

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MSTTWQAQMARMLCAWMRLGYSTRSGPYHGLPDAAAGLAFAAVLRIVTRASPKADDDGTFTALPAKAVEERAMVLLAIAAAFFIALLRSETCRSMVA*

>peptide 2 (42 aa)
GRNEKERGKIMTMNTIIPCRLNNSLHHGTNRKPACAHMHPDT*

>peptide 3 (33 aa)
MVQTENQRALTCIRTPKGHRRRLPHLPGTKLVA*

Sequence

>CNT3011397
CGGCAGGAACGAAAAAGAGAGGGGAAAAATAATGACAATGAACACAATTATTCCTTGTCGATTGAACAATAGTTTACATCATGGTACAAACCGAAAACCA
GCGTGCGCTCACATGCATCCGGACACCTAAAGGTCACCGGCGGCGCCTCCCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCAAGCGTTGTTGCCG
AGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCGATGCGGTAGCCCTCGACGGCGCCCATGAGCACGACCT
GGCAGGCCCAGATGGCAAGGATGCTCTGCGCGTGGATGAGGCTCGGGTACAGCACGCGGTCGGGGCCGTACCACGGGCTCCCGGACGCCGCCGCTGGCTT
GGCCTTCGCCGCCGTCTTGCGCATCGTCACGCGGGCCTCGCCGAAGGCGGACGACGACGGCACGTTCACGGCCTTGCCGGCGAAGGCCGTGGAGGAGAGG
GCCATGGTGCTGCTCGCCATTGCGGCTGCTTTTTTTATTGCACTGCTACGTAGCGAGACTTGCAGATCGATGGTGGCTTGAGATGCT