Detailed information on CNT30108670


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007539, E-value = 2e-97

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595552Oryza longistaminataOryza meridionalis37.150.8898.26115forward
CNT30369286Oryza longistaminataOryza glumipatula56.4529.3193.14175forward

Expression of CNT30108670

Peptides detected in this lncRNA

>peptide 1 (44 aa)
GQQNKLAANPVSETATERRTREAGKQISYKPHKKRDTERFMVKA*

>peptide 2 (71 aa)
GNKTNSRLILCLKLRPNDELVKQASKFHTSRTKRETQSDLWSKLNYFRASSGKTIRRYTLPKASSHETLDG*

Sequence

>CNT30108670
GGGCAACAAAACAAACTCGCGGCTAATCCTGTGTCTGAAACTGCGACCGAACGACGAACTCGTGAAGCAGGCAAGCAAATTTCATACAAGCCGCACAAAA
AGAGAGACACAGAGCGATTTATGGTCAAAGCTTAACTATTTCAGGGCAAGTTCAGGTAAAACCATACGGCGATACACACTTCCAAAAGCTTCATCGCACG
AAACTCTCGACGGCTAAAAAACACAGGGGATCACACGCCAGCCACATCACACGGTTCAGACTTTCAGACTCCCTTCCAGCCGGAATCACGTAGGACCACC
ACCAGCTTAA