Detailed information on CNT30104422


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30105855Oryza rufipogonOryza longistaminata65.634.1599.02307reverse complement

Expression of CNT30104422

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MSHYLFYTEHFTLKLHVWHWRLEETLNYSSNFLTKSYMNIIVYGSLRILIIRIEVHLVGFQAPQLEMLEVPYRPCKISPELGIL

>peptide 2 (38 aa)
KVYSGIVEVFTCVPTLNSAYVSAYTYMCIISGLVTYCI*

>peptide 3 (52 aa)
MCTNTQFCLRQCIHVYVHHQWTSHILHLKFTQCIINYIYNNIISLGTGVLDG*

Sequence

>CNT30104422
GAAAGTTTATTCAGGAATAGTTGAGGTGTTTACATGTGTACCAACACTCAATTCTGCTTACGTCAGTGCATACACGTATATGTGCATCATCAGTGGACTA
GTCACATACTGCATCTGAAGTTCACACAGTGCATCATCAATTACATATACAACAATATCATATCCCTAGGTACTGGAGTACTGGATGGATAATGTTGTGG
GTCACAGGTAATTCATGTCCCACTATCTTTTTTACACTGAACATTTTACACTGAAATTACATGTATGGCACTGGAGACTAGAGGAAACATTGAACTACTC
ATCCAATTTTTTAACTAAAAGTTACATGAATATCATTGTATACGGCTCGCTTAGAATCCTGATTATTAGGATAGAGGTGCATCTGGTTGGTTTTCAGGCA
CCGCAGCTTGAAATGCTGGAAGTTCCATATAGGCCTTGTAAAATCTCGCCAGAATTGGGTATTTTGAC