Detailed information on CNT30104201


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000925, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30109567Oryza rufipogonOryza longistaminata17.3767.9397.77269reverse complement
CNT30576518Oryza rufipogonOryza barthii11.0469.894.15171reverse complement

Expression of CNT30104201

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MLYMGGRGCIDGVDVLITCAFIYTDINIFHTTTHSQPSHISLPFTYFTSIQIFIIFHMQNRVNWIKYLFSKS*

>peptide 2 (30 aa)
MKYIHKYKHHSCIISVHHCLNIKVQHCSSF*

>peptide 3 (35 aa)
PSSHEVVVAVRSWRCPAVRIHPARILFPLDPLHRS*

>peptide 4 (44 aa)
MCIHIHRYQYISHNHTFTAISYFTTIHIFHIHSNIYHISHAKPS*

>peptide 5 (29 aa)
MKLAISSRTSSKLVGRDLVIVPYIVIIPD*

>peptide 6 (39 aa)
MLWHTWNPHWSPICCFTGKSFLWMRVSCPDFLRPPLCTY*

>peptide 7 (36 aa)
QVRMKSWWPSEVGAALQSESTPRESSSLWILSIVPE*

>peptide 8 (66 aa)
MVLMSSSHVHSYTQISIYFTQPHIHSHLIFHYHSHISHPFKYLSYFTCKTELIGSNIYLASLNINI*

Sequence

>CNT30104201
TCCAAGTTCGCATGAAGTCGTGGTGGCCGTCAGAAGTTGGCGCTGCCCTGCAGTCCGAATCCACCCCGCGCGAATCCTCTTCCCTTTGGATCCTCTCCAT
CGTTCCTGAGTAAAACACGAGTGCACGCGTCTCCGGGGTATAAAGACGAGGAATATGAACTCAAGAAAGAACTCACCTGATAATTTAGTTGACGTGCACG
AGCGCGGGTAATAGGACCATCATGCTGTACATGGGGGGACGTGGATGTATCGATGGTGTTGATGTCCTCATCACATGTGCATTCATATACACAGATATCA
ATATATTTCACACAACCACACATTCACAGCCATCTCATATTTCACTACCATTCACATATTTCACATCCATTCAAATATTTATCATATTTCACATGCAAAA
CCGAGTTAATTGGATCAAATATTTATTTAGCAAGTCTTAACATAAACATATGAAATATATACATAAATATAAGCATCACAGTTGCATAATAAGTGTTCAT
CACTGCCTAAACATAAAAGTTCAACATTGTTCATCATTTTAGTTTAAGCCTAAACATTCCTTTGTGGTTAATTATTTTGCGGAGGATGAAGCTGGCTATC
TCCTCGCGAACCTCCTCAAAGCTGGTAGGCAGAGACTTGGTTATTGTGCCCTACATTGTCATAATTCCAGATTAGTTGATCGATCATATATAAGTACTAA
AATGTAGTTAGTCTATCACAATTGAGACCACCGACCTCAAACTCAGCAAAGTCTTCACCTTTTCTCTGTATAGAAGGGACATGTTGTGGCACACATGGAA
TCCGCACTGGTCACCTATTTGTTGCTTCACCGGGAAGTCTTTTTTGTGGATGAGGGTATCATGTCCTGACTTCCTAAGGCCTCCTCTTTGCACGTATTAG
GCCCACGCTTCATCTATCGCTAGTTGAATTGGGGTCCAATCATATGCGTTCTTATCAATTCTGGAGTTCAGGTAGTGACATGTACTGCACTTAGGTGTTA
TGACCAGAAGGATCCAATGGGCACTGCGGCATTAATATGGTGAAAGCTAATTATGTACTGAAGGAATGTGTCATGCTGTTGTGTATATTTAGATAACACA
CTTACTATTGATTATAGGCGCACATAATGTACTCCTTGTCTCGGGGGGACCATAAGGTGTCGTAGATGTAGTTGACCATTCCTTGACGGTCATTCTGGAG
ATTTGTGACAATGACCACTTGTGGATCAAGGAAGGCAACTTCCGGTTCATTCTTCTGACACCATTGCCAACTTAACCTACACACAGGATAAACGATCTTG
TAAGCGAGTTAAACCGATTGTGATTACCAGATTGAGTTGGGTGACAATACTTACAAGGAGTAGCACTTAAGGAGGCTTGTGTCCACCGCTCGGAGCCTGT
AGAGGTCGAATAGATCCTTGAAGTCGACCACGATATAATTTGTTGGACCAAGGAATGGCTTTCCATTATGCTCTCCAAGGATATCGGTAGCTTTATTCGG
CTTCCTGGCGTTAGATTTCTCCATGTAGTATATGTGAAGGTCCTTGCAA