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Detailed information on CNT30102839


BLAST search results

BLAST vs Swiss-Prot:
sp|F4KIB2|TMN8_ARATH, E-value = 6e-156

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30564723Oryza rufipogonActinidia chinensis25.3818.5578.81302forward

Expression of CNT30102839

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MSSIAVINPPRFDGERKPKTANIMVTSSIPKNWTPVPT*

>peptide 2 (52 aa)
MKNSSMKTAPNGRIPPIRMVKAGFMYPACSGICLGILLVFTGASMAGFLKPR*

Sequence

>CNT30102839
GAAAACAGTAGTATTCGGTCCCGTATATAATAAAATGAATTTATACAGAGATCCATAAGAATTGAGAATAATATGCTCTGCCATACGAAACTAACAATCG
TAACTAGCCTTATATAACTTCATATCAAAGATGTATCATCTCATTTATAGTGAATGAACACAAGTGGTTTATAAGCTAAGAACTACGATATAAATTTTCT
CGAAAATCGGTAAAATACAGAGTGGATTCTGATCCTCGTCTCACAATTCTCCACAATAATCATACAGAACTTTTGGAAGCCGGATGTATAGCAACTCTGC
GCCTAGTCAATCTTCACAGATGAGTAAATCAATCTCGTGAACCACAAGCAGGCACAGAAACCAATTGTGCCAGAAGCATGTAGCCGAAGTACAGAATGCC
TGACACCAGTTTAGTAATCTGCAGCTTGGTGAAGAAGTAGAACCCAGCATACAGGAAGAGATAGATCGCAGATGATCCTGAGGTGAGATAGGACCTCCAC
CACCACATGTAATCCTCACTGCACAGTTGGAAGTAGCACAGCACGATTGCAATCTCCCCACAAGTGATGATGAGGATAATGAACACGAGGAAAAGGAAGC
CGAAGATGTAGTAAAACTGGTGAAGCCAGATTGAAGTGAGGATGAAAAATAGCTCAATGAAAACTGCTCCGAATGGAAGAATCCCACCAATAAGAATGGT
AAAGGCAGGGTTCATGTACCCAGCCTGCTCTGGGATCTGTCTCGGGATTTTGTTGGTCTTCACTGGAGCCTCAATGGCAGGTTTCTTGAAACCAAGATAG
CCCCCAACAAAGACAAGTGGAACCGAGATACCGAACCAAAGAAGCACCAAGGCAAACATTGTGGAGAAAGGGACAGCACCTGATGATTTCTCCCCCCATA
TAAGAGCATTCAAGACGAAGAAAATACCAAAAGCAATTCCCGGAAACAGGAAAGCAGTCTTCAAGGTGATGCTCTTCCATTCTGATCCTTTAAACATCTT
ATAGAGTCGGGAAGAAGCATATCCAGCAAACAGCCCCATCAAGACCCAAATGAGCAGCATCGCAGTCATCAATCCTCCACGGTTTGATGGAGAAAGGAAA
CCCAAGACAGCAAACATCATGGTAACCAGCAGCATACCAAAGAACTGGACACCAGTGCCAACATAGACACAGAGTAAGTCAGAGTTAGTT