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Detailed information on CNT30102632


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT001031, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554480Oryza rufipogonOryza glaberrima56.2573.2497.96832forward
CNT30577015Oryza rufipogonOryza barthii33.4795.7497.58495forward

Expression of CNT30102632

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MTLATCYPQTKKADKVFMIFQPHCPLSKKGKGGVIISPANVPRKLPPPHPYPRRCSSQQMNRCPSRCSRSSSPIDFLSMY*

>peptide 2 (30 aa)
MPTRIASRCSPPANCLDDLGNLLSADQEGR*

>peptide 3 (44 aa)
MDLLRADFNVLMIEFQLMKSNIEVDSIKLTANAHQDSFPMLAAG*

>peptide 4 (45 aa)
MAASATATMAASATATGAGAGLLSRWTLLSCTRRGYDLHSSRDKS*

>peptide 5 (51 aa)
VNSKLLRKNKSKTTNLHLFSFFKYPIPTRYSYNSEYVVNLKLLLKKSKKRK*

Sequence

>CNT30102632
GTAAACTCAAAATTATTAAGAAAAAACAAATCTAAAACAACAAATTTACATTTATTTTCCTTCTTTAAATATCCTATACCTACTCGTTACTCCTATAACT
CAGAATATGTAGTAAACCTAAAATTATTATTAAAAAAATCCAAAAAAAGAAAATAACCTTGAAAAATCTAAAAAAAGAAAGAAGACAAACTTATATCATG
AAATAGGATCATTAATACCTCCGCAGCTTAAAAAAATGATTGTATTTTTTTTGTTAAACAGGATATGTTTAAAAAACTCTGAATATATTAAATGATTGAT
CTTTAAAAAAATTCAAATTCACAAGCACACCAATTTTATCATTTATTATTTTTGAGTGATAAGTATATATATATATTCTGATTAGCAAGTGTGCCAACGA
CACGCCGATTTTCTAGTACTGTCTCGTTACGCTATTTAACATGATTTTACGGGATAGTTTTAGAATTGAGATCAAAGGGTTGCGATTAAAAATGAACTCG
ATAGAGAGGGACTTAAAGTGTACTTAATCACGGTGAGGCAGAGTGGAAGAGCGCGTTGCAAAGACCAAAACCCCATCTTTCTTCCCATGGCCGCCTCCGC
CACCGCCACTATGGCCGCCTCCGCCACCGCCACTGGCGCCGGCGCCGGGCTCCTCAGCCGCTGGACTCTACTCTCCTGTACACGACGAGGGTACGATCTC
CACTCTTCCCGTGATAAGTCTTAAAAACCCTAATCCTTATTTATTTTTTCCGTGCCCATCCGCCGCGACGACAACCGGCGCCGCCGCATCTACGCCACCT
GCGTGGTTCGCACGTCTCTTCTACACTTCGCAGACACCCCCTACCATCCTAGCCACTGCCCGGCGGCTTACTTATCCGTGATCTCGGTCGGGAGATGGAC
CTGTTGCGGGCTGATTTCAACGTCCTCATGATAGAGTTTCAGCTGATGAAATCTAACATTGAGGTGGACTCCATTAAGCTCACCGCAAATGCCCACCAGG
ATAGCTTCCCGATGCTCGCCGCCGGCTAACTGTCTTGATGACCTTGGCAACTTGTTATCCGCAGACCAAGAAGGCAGATAAAGTTTTCATGATTTTTCAA
CCACACTGCCCGCTGAGCAAGAAGGGGAAAGGAGGGGTGATCATTTCCCCCGCCAACGTACCAAGAAAACTGCCACCCCCACACCCATATCCAAGGAGGT
GCTCAAGTCAGCAAATGAATAGGTGCCCGAGTAGGTGCTCGAGGTCGAGCTCACCTATAGATTTCTTGAGTATGTACTGAAGTTGTATAATATAGCTTGA
GTATGTGCTGAAGTTGTATAATCTAGACTTTTGGAGTTTGTATGGTATTATGTTAAACCCAAAGCTAGCTTCCCTGTTGATCACTTGATTGTGAACATTT
ATTCAATCATATGTCTACAGCAGCAAGGCATATGTTGTGGTGCCATCGCAATGCCATCTATTTTGTTGCAACTCTGTGG